HHsearch alignment for GI: 254781047 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=96.61 E-value=0.016 Score=36.00 Aligned_cols=139 Identities=21% Similarity=0.374 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-HHHH---HHH------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 886499888887728999999998578111-4688---899------999999999999713112246655780789999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-KCRL---HFY------EFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K~R~---HFh------~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404)
T Consensus 193 tKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~G-------yrp~~-~gf~~~~G~f~~~~~ 264 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG-------YRPNG-VGFRRKDGIFYNFCQ 264 (459)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCC-------CCCCC-CCCEECCCHHHHHHH
T ss_conf 5882796589998878999999999707887784689983588661787646-------05688-861326836999999
Q ss_pred HHHCC---CCEEEEEEEEECCCHHHHHHHHHHHHHHH--CC---CEEEEECC------CCHHHHHCCCC-C-HHHHHHHH
Q ss_conf 99613---87999842320471358889999999985--49---68998178------68677523874-0-56689899
Q gi|254781047|r 135 SIALE---SRVLCFDEFMITNIADAIILSRLFAALFS--HG---CIIVMTSN------FIPENLYKDEI-N-RNVLVSFI 198 (404)
Q Consensus 135 ~l~~~---~~lLCfDEF~V~DiaDAmil~rl~~~lf~--~g---v~lV~TSN------~~P~dLY~~GL-q-R~~FlPfI 198 (404)
T Consensus 265 ~A~~~p~~~y~~iideinr~~~~--~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtadrs~~~~ 342 (459)
T PRK11331 265 QAKEQPEKKYVFIIDEINRANLS--KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred HHHHCCCCCEEEEEEHHHCCCHH--HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCCHHHHHH
T ss_conf 99849898769998432033889--9999999996412567652256300368885334688659998503341068878
Q ss_pred H-HHHHCCEEEECCCC
Q ss_conf 9-99850508980473
Q gi|254781047|r 199 E-LLEKKLEIISLDSG 213 (404)
Q Consensus 199 ~-~lk~~~~V~~l~~~ 213 (404)
T Consensus 343 d~alrRrf~f~~~~pd 358 (459)
T PRK11331 343 DYALRRRFSFIDIEPG 358 (459)
T ss_pred HHHHHHHHCCEECCCC
T ss_conf 9999865021215898