HHsearch alignment for GI: 254781047 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=97.36 E-value=0.0011 Score=43.40 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=73.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-----------------HHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99888887728999999998578111-----------------468----889999999999999971311224665578
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-----------------KCR----LHFYEFMKDVHSRIIMYRKKIEFGEILESD 127 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-----------------K~R----~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d 127 (404)
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~--------~~--~-~~~~~~d 107 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDD--------PK--R-KYKSVID 107 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCC--------HH--H-CCCCHHH
T ss_conf 98889298489999999999967997567833311653113564001016642344201--------53--3-2773789
Q ss_pred HHHHHHHHHH------CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 0789999996------1387999842320471358889999999985496899817868677523874056689899999
Q gi|254781047|r 128 PIPLVASSIA------LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELL 201 (404)
Q Consensus 128 pl~~va~~l~------~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~l 201 (404)
T Consensus 108 ~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~-~~~~fIl~t~~~-~~i-------------i~tI 172 (337)
T PRK12402 108 NFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYS-ETCRFIFSTTQP-SKL-------------IPPI 172 (337)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCC-CCC-------------CHHH
T ss_conf 9999999986148877880499970713179999999998874088-766998723864-447-------------5247
Q ss_pred HHCCEEEECCCC
Q ss_conf 850508980473
Q gi|254781047|r 202 EKKLEIISLDSG 213 (404)
Q Consensus 202 k~~~~V~~l~~~ 213 (404)
T Consensus 173 ~SRC~~i~F~~~ 184 (337)
T PRK12402 173 RSRCLPLFFRPV 184 (337)
T ss_pred HHHCEEEECCCC
T ss_conf 762445435898