HHsearch alignment for GI: 254781047 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=97.36  E-value=0.0011  Score=43.40  Aligned_cols=119  Identities=15%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCH-----------------HHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99888887728999999998578111-----------------468----889999999999999971311224665578
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEK-----------------KCR----LHFYEFMKDVHSRIIMYRKKIEFGEILESD  127 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~-----------------K~R----~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d  127 (404)
T Consensus        39 lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~--------~~--~-~~~~~~d  107 (337)
T PRK12402         39 LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDD--------PK--R-KYKSVID  107 (337)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCC--------HH--H-CCCCHHH
T ss_conf             98889298489999999999967997567833311653113564001016642344201--------53--3-2773789


Q ss_pred             HHHHHHHHHH------CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             0789999996------1387999842320471358889999999985496899817868677523874056689899999
Q gi|254781047|r  128 PIPLVASSIA------LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELL  201 (404)
Q Consensus       128 pl~~va~~l~------~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~l  201 (404)
T Consensus       108 ~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~-~~~~fIl~t~~~-~~i-------------i~tI  172 (337)
T PRK12402        108 NFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYS-ETCRFIFSTTQP-SKL-------------IPPI  172 (337)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCC-CCC-------------CHHH
T ss_conf             9999999986148877880499970713179999999998874088-766998723864-447-------------5247


Q ss_pred             HHCCEEEECCCC
Q ss_conf             850508980473
Q gi|254781047|r  202 EKKLEIISLDSG  213 (404)
Q Consensus       202 k~~~~V~~l~~~  213 (404)
T Consensus       173 ~SRC~~i~F~~~  184 (337)
T PRK12402        173 RSRCLPLFFRPV  184 (337)
T ss_pred             HHHCEEEECCCC
T ss_conf             762445435898