HHsearch alignment for GI: 254781047 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=94.29 E-value=0.013 Score=36.64 Aligned_cols=126 Identities=20% Similarity=0.359 Sum_probs=69.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHH------HHHHHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 64998888877289999999985781114688899999999--999------9997131122466557807899999961
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDV--HSR------IIMYRKKIEFGEILESDPIPLVASSIAL 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~i--h~~------l~~~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404)
T Consensus 40 ehvlllGPPGtAKS~larrl~~~~~~a~----~FeyLltRFstPeElFGP~si~~Lk~~---------g~y~R~t~G~LP 106 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQHAR----AFEYLMTRFSTPEEVFGPLSIQALKDE---------GRYERLTSGYLP 106 (498)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCH----HHHHHHHCCCCHHHHCCCCCHHHHHHC---------CEEEEECCCCCC
T ss_conf 9469888995138899999999855740----899998746988885383329987117---------848972267588
Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHH----HHCCC--------EEEEECCCCHHHHHCCCCCH--HHHHHHHHHHHHC
Q ss_conf 3879998423204713588899999999----85496--------89981786867752387405--6689899999850
Q gi|254781047|r 139 ESRVLCFDEFMITNIADAIILSRLFAAL----FSHGC--------IIVMTSNFIPENLYKDEINR--NVLVSFIELLEKK 204 (404)
Q Consensus 139 ~~~lLCfDEF~V~DiaDAmil~rl~~~l----f~~gv--------~lV~TSN~~P~dLY~~GLqR--~~FlPfI~~lk~~ 204 (404)
T Consensus 107 ~A~iaFLDEIfKan---sAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~--~~~L~AlyDRfL-------~R 174 (498)
T PRK13531 107 EAEIVFLDEIWKAG---PAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEA--DSSLEALYDRML-------IR 174 (498)
T ss_pred CCEEEHHHHHHHCC---HHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCC--CCCHHHHHHHHH-------HH
T ss_conf 66131578786148---8999999998646403479831304468864304679999--840788887644-------10
Q ss_pred CEEEECCCCCHHH
Q ss_conf 5089804731122
Q gi|254781047|r 205 LEIISLDSGQDYR 217 (404)
Q Consensus 205 ~~V~~l~~~~DYR 217 (404)
T Consensus 175 ~~v~~v~~~~nF~ 187 (498)
T PRK13531 175 LWLDKVQDKANFR 187 (498)
T ss_pred EECCCCCCHHHHH
T ss_conf 2231316766799