>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=96.09 E-value=0.021 Score=35.30 Aligned_cols=181 Identities=18% Similarity=0.186 Sum_probs=93.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999999999986135433322566431024666666886499888887728999999998578111468889999 Q gi|254781047|r 24 AQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF 103 (404) Q Consensus 24 ~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F 103 (404) T Consensus 8 GQ~~vk~~L~l~I~AA--------------------k~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~--l~i----- 60 (305) T TIGR00635 8 GQEKVKEQLQLFIEAA--------------------KMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--LKI----- 60 (305) T ss_pred CCHHHHHHHHHHHHHH--------------------HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC--CEE----- T ss_conf 8288999999999999--------------------8248973416631756874678999999983893--267----- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH Q ss_conf 99999999997131122466557807899999961387999842320471358889999999985496899817868677 Q gi|254781047|r 104 MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN 183 (404) Q Consensus 104 M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d 183 (404) T Consensus 61 -------------TsGP~L~kPgDlaaiLt--~L~~gDVLFIDEIHR--------L~p~~EE~----------------- 100 (305) T TIGR00635 61 -------------TSGPALEKPGDLAAILT--NLEEGDVLFIDEIHR--------LSPAIEEL----------------- 100 (305) T ss_pred -------------EECCCCCCHHHHHHHHH--HCCCCCEEECCHHHH--------CCHHHHHH----------------- T ss_conf -------------40675547578999997--056896310125650--------48334531----------------- Q ss_pred HHCCCCCHHHHHHHHHHHHHCCEEEECCC----CCHHHHCCC-----------CCCCEEEEC----------CCHHHHHH Q ss_conf 52387405668989999985050898047----311221123-----------678302203----------53022689 Q gi|254781047|r 184 LYKDEINRNVLVSFIELLEKKLEIISLDS----GQDYRRKEQ-----------SILPIYMTP----------LNSYNRVL 238 (404) Q Consensus 184 LY~~GLqR~~FlPfI~~lk~~~~V~~l~~----~~DYR~~~~-----------~~~~~y~~p----------~~~~~~~~ 238 (404) T Consensus 101 LYpA-----------------MEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G~lt~PLrdRFG~~~rl~fY~~~E 163 (305) T TIGR00635 101 LYPA-----------------MEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTPEE 163 (305) T ss_pred CCCC-----------------CCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH T ss_conf 0530-----------------01217877871289852576068694420000347741031334544745402689878 Q ss_pred HHHHHHHHCCC--CCCCCCCEEEECCEEEEECCCCCCCCCC--CHHHHHHHHCC Q ss_conf 99999986044--4467763276368089961220211110--19998521024 Q gi|254781047|r 239 MDKLWAHITKG--KKSLSLNISTEGGYEIHVPFFCSRVSRF--SFFDLCDRPLS 288 (404) Q Consensus 239 l~~~f~~l~~~--~~~~~~~i~v~~gR~i~v~~~~~~va~f--~F~eLC~~~lg 288 (404) T Consensus 164 L~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDfA~V~~~~~I 217 (305) T TIGR00635 164 LAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQGVI 217 (305) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999987533441430077899999875478637888776766448887267873

HHsearch alignment for GI: 254781047 and conserved domain: TIGR00635