>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.

Probab=96.02 E-value=0.005 Score=39.27 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=80.1 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 6688649988888772899999999857811---1468889999999999999971311224665578078999999613 Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE---KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE 139 (404) Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~ 139 (404) T Consensus 572 ~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGese~~------------------ir~if~~arq~ 633 (980) T TIGR01243 572 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKA------------------IREIFRKARQA 633 (980) T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHH------------------HHHHHHHHHHC T ss_conf 889973487468986168888877401456467740731223440324799------------------99999986412 Q ss_pred -CCEEEEEEEEEC-----------CCHHHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHHHH-- Q ss_conf -879998423204-----------7135888999999998----5496899817868----67752387405668989-- Q gi|254781047|r 140 -SRVLCFDEFMIT-----------NIADAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLVSF-- 197 (404) Q Consensus 140 -~~lLCfDEF~V~-----------DiaDAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~FlPf-- 197 (404) T Consensus 634 aP~~~f~deidaiaP~rG~~~~~~~vtd-~~~nqll~e~dG~~~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd 712 (980) T TIGR01243 634 APAIIFFDEIDAIAPARGASLDEKGVTD-RIVNQLLTELDGLEELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPD 712 (980) T ss_pred CCEEEEEECHHHHCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC T ss_conf 8737873021110541244210010268-999999986404434366589861588742361004887412168605985 Q ss_pred ----HHHHHHCCEEEECCCCCHHHHC Q ss_conf ----9999850508980473112211 Q gi|254781047|r 198 ----IELLEKKLEIISLDSGQDYRRK 219 (404) Q Consensus 198 ----I~~lk~~~~V~~l~~~~DYR~~ 219 (404) T Consensus 713 ~~ar~~ifk~ht~~~~l~~dv~l~~l 738 (980) T TIGR01243 713 EEARLEIFKIHTRSMPLAEDVDLEEL 738 (980) T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHH T ss_conf 56767676553111353013438999

HHsearch alignment for GI: 254781047 and conserved domain: TIGR01243