HHsearch alignment for GI: 254781047 and conserved domain: TIGR01243

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=95.99  E-value=0.0065  Score=38.54  Aligned_cols=123  Identities=18%  Similarity=0.208  Sum_probs=70.9

Q ss_pred             HCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             13543332256643102466666688649988888772899999999857811146888999999999999997131122
Q gi|254781047|r   41 KQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF  120 (404)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~  120 (404)
T Consensus       223 elP~~hPe~f~~lG--------iePPkG~ll~GPPGtGktllaka~ane~~a~f-~~inGPeims-------ky~Ge---  283 (980)
T TIGR01243       223 ELPLKHPELFEKLG--------IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF-IAINGPEIMS-------KYYGE---  283 (980)
T ss_pred             HCCCCCHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCHHHH-------HHCCC---
T ss_conf             43575647898618--------89987358755898617899999875305517-8850603443-------31363---


Q ss_pred             CCCCCCCHHHHHHHHHHCCCC-EEEEEEEEECCCH--------HHHH---HHHHHHHHHHCCCEEEEECCCCHHHHHC
Q ss_conf             466557807899999961387-9998423204713--------5888---9999999985496899817868677523
Q gi|254781047|r  121 GEILESDPIPLVASSIALESR-VLCFDEFMITNIA--------DAII---LSRLFAALFSHGCIIVMTSNFIPENLYK  186 (404)
Q Consensus       121 ~~~~~~dpl~~va~~l~~~~~-lLCfDEF~V~Dia--------DAmi---l~rl~~~lf~~gv~lV~TSN~~P~dLY~  186 (404)
T Consensus       284 ----~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dP  357 (980)
T TIGR01243       284 ----SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDP  357 (980)
T ss_pred             ----CHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH
T ss_conf             ----07899999986530587078741211007641000016889999999999740024872899814688500262