HHsearch alignment for GI: 254781047 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.71 E-value=0.01 Score=37.31 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 05899999999748877898999999999999999861354333225664310246666668864998888877289999
Q gi|254781047|r 4 DLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM 83 (404)
Q Consensus 4 ~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM 83 (404)
T Consensus 334 ~~~Q~hi~eve~~~~~~l~~~Qk~AL~~~~~-------------------------------~Kv~iLTGGPGTGKtT~t 382 (769)
T TIGR01448 334 EDLQKHILEVEKKLRLKLSEEQKEALKTAIQ-------------------------------DKVVILTGGPGTGKTTIT 382 (769)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------------------CCEEEEECCCCCCHHHHH
T ss_conf 8999999986875067706889999999860-------------------------------948998577888616899
Q ss_pred HHHHHH------------------------CCCCH-HHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 999985------------------------78111-4688899999----999999999713112246655780789999
Q gi|254781047|r 84 NLFFAL------------------------VPIEK-KCRLHFYEFM----KDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404)
Q Consensus 84 dlFy~~------------------------l~~~~-K~R~HFh~FM----~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404)
T Consensus 383 ~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl--~E~TG~~a~TIHRLlG~-~~~~~~~~k~~~~------- 452 (769)
T TIGR01448 383 KAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL--AEVTGLEALTIHRLLGY-GSDTKSENKNLED------- 452 (769)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC--CCCCCCHHHHHHHHHCC-CCCCCCCCHHHCC-------
T ss_conf 9999999871687755312456776488737743788851--10026212347786368-9888732110113-------
Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH-CCEEEECCC
Q ss_conf 99613879998423204713588899999999854-9689981786867752387405668989999985-050898047
Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH-GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEK-KLEIISLDS 212 (404)
Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~-~~~V~~l~~ 212 (404)
T Consensus 453 --~~~~DL~IvDE~SM---~Dt~L~~~lL~a~P~~a~lllVGD~DQLPSV-~p-G------~VL~DLi~s~~iP~~~LT- 518 (769)
T TIGR01448 453 --PIDADLLIVDESSM---VDTWLASSLLAAVPDHARLLLVGDADQLPSV-GP-G------QVLKDLIQSKVIPVTRLT- 518 (769)
T ss_pred --CCCCCEEEEECCCH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CC-C------HHHHHHHHCCCCCEEECC-
T ss_conf --47877699814621---8899999998617977779888376888988-64-4------089999846886612121-
Q ss_pred CCHHHHCC
Q ss_conf 31122112
Q gi|254781047|r 213 GQDYRRKE 220 (404)
Q Consensus 213 ~~DYR~~~ 220 (404)
T Consensus 519 -~vyRQ~~ 525 (769)
T TIGR01448 519 -KVYRQAE 525 (769)
T ss_pred -CEEEECC
T ss_conf -1124113