HHsearch alignment for GI: 254781047 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92 E-value=1.1e-08 Score=75.19 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=65.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 6499888887728999999998578111468889---9999999999999713112246655780789999996138799
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~~~~~~~~~~~~-----------------------l~~l~~~d~l 94 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLAELAQADPEV-----------------------LEGLEQADLV 94 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEECHHHHHHHHHHH-----------------------HHHCCCCCEE
T ss_conf 8699989999988999999999986269-957995299987753999-----------------------9727448999
Q ss_pred EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 984232047--13588899999999854968998178686775
Q gi|254781047|r 144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
T Consensus 95 ~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l 137 (226)
T TIGR03420 95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226)
T ss_pred EEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHC
T ss_conf 9966333437837899999999999865282898678882320