HHsearch alignment for GI: 254781047 and conserved domain: TIGR03420

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92  E-value=1.1e-08  Score=75.19  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             6499888887728999999998578111468889---9999999999999713112246655780789999996138799
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
T Consensus        39 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~~~~~~~~~~~~-----------------------l~~l~~~d~l   94 (226)
T TIGR03420        39 RFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLAELAQADPEV-----------------------LEGLEQADLV   94 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEECHHHHHHHHHHH-----------------------HHHCCCCCEE
T ss_conf             8699989999988999999999986269-957995299987753999-----------------------9727448999


Q ss_pred             EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             984232047--13588899999999854968998178686775
Q gi|254781047|r  144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
T Consensus        95 ~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l  137 (226)
T TIGR03420        95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL  137 (226)
T ss_pred             EEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHC
T ss_conf             9966333437837899999999999865282898678882320