HHsearch alignment for GI: 254781047 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.44 E-value=0.43 Score=27.02 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
T Consensus 28 i~~liG~nGaGKSTLl~~i~Gl~~p 52 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999998599999999779889