HHsearch alignment for GI: 254781047 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.029 Score=34.40 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=68.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------CCCCCCCHHHH
Q ss_conf 9988888772899999999857811146888999999999999997131122-----------------46655780789
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF-----------------GEILESDPIPL 131 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~-----------------~~~~~~dpl~~ 131 (404)
T Consensus 29 ~gl~G~NGaGKSTLl~~i~Gl~~p~~-G~i~i~g~--~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~kqrv~ 105 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGLLKPDS-GEIKVLGK--DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCE--ECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHH
T ss_conf 99987899799999999976857787-88999999--9886848886578999568766712677898633989999999
Q ss_pred HHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99999613879998423-2047135888999999998549689981786867
Q gi|254781047|r 132 VASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 132 va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
T Consensus 106 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~ 157 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999964999999908865799999999999999999689999999283899