HHsearch alignment for GI: 254781047 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.081 Score=31.61 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CC-----------H--HHHHHH------HHHHHHHHHHHHH---HHCCCCCCC
Q ss_conf 499888887728999999998578---11-----------1--468889------9999999999999---713112246
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP---IE-----------K--KCRLHF------YEFMKDVHSRIIM---YRKKIEFGE 122 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~---~~-----------~--K~R~HF------h~FM~~ih~~l~~---~~~~~~~~~ 122 (404)
T Consensus 35 ~~~llGpnGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~igyv~q~~~~~~~~tv~e~l~~~~~l~~-LS~g- 112 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG-LSVE- 112 (192)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCHHHHHHEEEEECCHHCCCCCHHHHHHHHHHHHHC-CCHH-
T ss_conf 99999999998899999983798788317899987827667756227999411330734549999986677733-7976-
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 6557807899999961387999842320-4713588899999999854968998178686775
Q gi|254781047|r 123 ILESDPIPLVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
T Consensus 113 ---qrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~tiii~th~~~~~i 172 (192)
T cd03232 113 ---QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI 172 (192)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf ---765899999984499889984887688989999999999999969999999983637999