HHsearch alignment for GI: 254781047 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.096 Score=31.13 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHH--------------------------HHHHHHHHHHHHHHH---HH
Q ss_conf 86499888887728999999998578111--468--------------------------889999999999999---97
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCR--------------------------LHFYEFMKDVHSRII---MY 114 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R--------------------------~HFh~FM~~ih~~l~---~~ 114 (404)
T Consensus 33 Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~ 110 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL--TVRETLDFALRC 110 (202)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEEEECCCCCCCCCC--CHHHHHHHHHHH
T ss_conf 849999989999889999998378789875137999999994051486420199986732237688--099999999984
Q ss_pred HCCC-CCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHH
Q ss_conf 1311-224665578078999999613879998423-20471358889999999985-49689981786867752
Q gi|254781047|r 115 RKKI-EFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFIPENLY 185 (404)
Q Consensus 115 ~~~~-~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~P~dLY 185 (404)
T Consensus 111 ~~~~~~~~LSgGqkqRv~iA~aL~~~P~illlDEPt~gLD~~~~~~i~~~l~~l~~~~~~t~ii~~~~~~~~~~ 184 (202)
T cd03233 111 KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIY 184 (202)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHH
T ss_conf 65874445899999999999999529988998387656899999999999999998779989999906989999