HHsearch alignment for GI: 254781047 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.33 E-value=0.58 Score=26.19 Aligned_cols=110 Identities=9% Similarity=0.138 Sum_probs=56.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-H-----HHHHH------HHHHHHHHHHHHH-----------------------
Q ss_conf 99888887728999999998578111-4-----68889------9999999999999-----------------------
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-K-----CRLHF------YEFMKDVHSRIIM----------------------- 113 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-K-----~R~HF------h~FM~~ih~~l~~----------------------- 113 (404)
T Consensus 28 v~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e~~~~l~l~~ 107 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ 107 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
T ss_conf 99997999769999999977878886079989820576874332577727999999886431212799999998849956
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHH-CCCEEEEECC
Q ss_conf 713112246655780789999996138799984232-0471358889999999985-4968998178
Q gi|254781047|r 114 YRKKIEFGEILESDPIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFS-HGCIIVMTSN 178 (404)
Q Consensus 114 ~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~-~gv~lV~TSN 178 (404)
T Consensus 108 ~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~~~Tvi~VtH 174 (246)
T cd03237 108 ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 7648700289859999999999841999999848987689999999999999999867989999837