HHsearch alignment for GI: 254781047 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.84  E-value=0.19  Score=29.31  Aligned_cols=111  Identities=16%  Similarity=0.084  Sum_probs=58.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHH----HHHHHHH--HHHHHHHHHHHHH------CCCCCCCCCCCCHHHHHHHH
Q ss_conf             4998888877289999999985781114----6888999--9999999999971------31122466557807899999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKK----CRLHFYE--FMKDVHSRIIMYR------KKIEFGEILESDPIPLVASS  135 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K----~R~HFh~--FM~~ih~~l~~~~------~~~~~~~~~~~dpl~~va~~  135 (404)
T Consensus        23 ~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~l~~~~~~LSGGqkQRvaiAra  101 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF-LIDVGLGYLTLGQKLSTLSGGELQRVKLASE  101 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHH-HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999999999989999998887610311203210137553688577999-9974886677899168689999999999999


Q ss_pred             HHCCCC--EEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             961387--9998423-2047135888999999998549689981786
Q gi|254781047|r  136 IALESR--VLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       136 l~~~~~--lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
T Consensus       102 L~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd  148 (176)
T cd03238         102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN  148 (176)
T ss_pred             HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             98689986899717744589879999999999999879989999478