HHsearch alignment for GI: 254781047 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.84 E-value=0.19 Score=29.31 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=58.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHH----HHHHHHH--HHHHHHHHHHHHH------CCCCCCCCCCCCHHHHHHHH
Q ss_conf 4998888877289999999985781114----6888999--9999999999971------31122466557807899999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKK----CRLHFYE--FMKDVHSRIIMYR------KKIEFGEILESDPIPLVASS 135 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K----~R~HFh~--FM~~ih~~l~~~~------~~~~~~~~~~~dpl~~va~~ 135 (404)
T Consensus 23 ~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~l~~~~~~LSGGqkQRvaiAra 101 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF-LIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHH-HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999999989999998887610311203210137553688577999-9974886677899168689999999999999
Q ss_pred HHCCCC--EEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 961387--9998423-2047135888999999998549689981786
Q gi|254781047|r 136 IALESR--VLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 136 l~~~~~--lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
T Consensus 102 L~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd 148 (176)
T cd03238 102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 98689986899717744589879999999999999879989999478