>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

Probab=92.98  E-value=0.77  Score=25.40  Aligned_cols=19  Identities=37%  Similarity=0.377  Sum_probs=16.0

Q ss_pred             CCEEEEECCCCCCHHHHHH
Q ss_conf             8649988888772899999
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMN   84 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMd   84 (404)
T Consensus        21 G~~~aIiG~sGsGKSTLl~   39 (261)
T cd03271          21 GVLTCVTGVSGSGKSSLIN   39 (261)
T ss_pred             CCEEEEECCCCCCHHHHHH
T ss_conf             9999998799986999999