HHsearch alignment for GI: 254781047 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=96.70  E-value=0.015  Score=36.24  Aligned_cols=118  Identities=16%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             49988888772899999999857811146--8889999-99999999997131122466557807899999961387999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEF-MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~F-M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
T Consensus        24 pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~l----e~A-~gGTL~   98 (168)
T pfam00158        24 TVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLF----ELA-DGGTLF   98 (168)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE----EEC-CCCEEE
T ss_conf             889989998888999999998524356883125678998779999875876676689875789964----226-998788


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHH
Q ss_conf             84232047135888999999998-------------54968998178686775238740566
Q gi|254781047|r  145 FDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNV  193 (404)
Q Consensus       145 fDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~  193 (404)
T Consensus        99 LdeI~~L~~~~Q---~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~D  157 (168)
T pfam00158        99 LDEIGELPLELQ---AKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFRED  157 (168)
T ss_pred             CCCHHHCCHHHH---HHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHH
T ss_conf             024413999999---99999985796997799845888549999659889999883996399