HHsearch alignment for GI: 254781047 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=96.70 E-value=0.015 Score=36.24 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=63.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 49988888772899999999857811146--8889999-99999999997131122466557807899999961387999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEF-MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~F-M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
T Consensus 24 pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~l----e~A-~gGTL~ 98 (168)
T pfam00158 24 TVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLF----ELA-DGGTLF 98 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE----EEC-CCCEEE
T ss_conf 889989998888999999998524356883125678998779999875876676689875789964----226-998788
Q ss_pred EEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHH
Q ss_conf 84232047135888999999998-------------54968998178686775238740566
Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNV 193 (404)
Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~ 193 (404)
T Consensus 99 LdeI~~L~~~~Q---~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~D 157 (168)
T pfam00158 99 LDEIGELPLELQ---AKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFRED 157 (168)
T ss_pred CCCHHHCCHHHH---HHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHH
T ss_conf 024413999999---99999985796997799845888549999659889999883996399