RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus
Liberibacter asiaticus str. psy62]
         (404 letters)



>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
           ATP-binding subunit.  This protein family is the
           ATP-binding cassette subunit of binding
           protein-dependent ABC transporter complex that strictly
           co-occurs with TIGR03769. TIGRFAMs model TIGR03769
           describes a protein domain that occurs singly or as one
           of up to three repeats in proteins of a number of
           Actinobacteria, including Propionibacterium acnes
           KPA171202. The TIGR03769 domain occurs both in an
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           ATP-binding subunits outside the scope of this family
           include manganese transporter MntA in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 223

 Score = 33.7 bits (77), Expect = 0.091
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 131 LVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEI 189
           LVA ++A    VL  DE F   ++    +L+ LF  L   G  I+MT++ + + +     
Sbjct: 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM--ATC 180

Query: 190 NRNVLVS 196
           +R VL++
Sbjct: 181 DRVVLLN 187


>gnl|CDD|162606 TIGR01924, rsbW_low_gc, serine-protein kinase RsbW.  This model
           describes the anti-sigma B factor also known as
           serine-protein kinase RsbW. Sigma B controls the general
           stress regulon in B subtilis and is activated by cell
           stresses such as stationary phase and heat shock. RsbW
           binds to sigma B and prevents formation of the
           transcription complex at the promoter. RsbV
           (anti-anti-sigma factor) binds to RsbW to inhibit
           association with sigma B, however RsbW can phosphorylate
           RsbV, causing disassociation of the RsbV/RsbW complex.
           Low ATP level or environmental stress causes the
           dephosphorylation of RsbV.
          Length = 159

 Score = 32.5 bits (74), Expect = 0.19
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 185 YKDEINRNVLVSFIELLEKKLEIISLDSGQ--DYRRKEQSILPI 226
           YK+  N  + +SF  + E +LEII  D G   D    +QS+ P 
Sbjct: 59  YKEGENGEIGISF-HIYEDRLEIIVSDQGDSFDMDTFKQSLGPY 101


>gnl|CDD|179735 PRK04069, PRK04069, serine-protein kinase RsbW; Provisional.
          Length = 161

 Score = 31.1 bits (71), Expect = 0.51
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 185 YKDEINRNVLVSFIELLEKKLEIISLDSGQ--DYRRKEQSILPIY 227
           YK++    + + F E+ E +LEI+  D+G   DY   +  + P  
Sbjct: 59  YKEDEVGEIHIRF-EIYEDRLEIVVADNGVSFDYETLKSKLGPYD 102


>gnl|CDD|181587 PRK08939, PRK08939, primosomal protein DnaI; Reviewed.
          Length = 306

 Score = 29.8 bits (68), Expect = 1.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 66  MQGIYLHGDVGQGKSMLM 83
           ++G+YL+GD G GKS L+
Sbjct: 156 VKGLYLYGDFGVGKSYLL 173


>gnl|CDD|178741 PLN03200, PLN03200, cellulose synthase-interactive protein;
            Provisional.
          Length = 2102

 Score = 29.7 bits (67), Expect = 1.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 10   LISLIQDKKLKYNPAQESVVKSFDRLLVD 38
            LISL+  +    + AQE+ V + DRLL D
Sbjct: 1364 LISLLVSES---STAQEAGVCALDRLLDD 1389


>gnl|CDD|177379 PHA02544, 44, clamp loader, small subunit; Provisional.
          Length = 316

 Score = 28.8 bits (65), Expect = 2.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 127 DPIPLVASSIALES--RVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFI 180
           + +   AS+++L    +V+  DEF    +ADA    R F   +S  C  ++T+N  
Sbjct: 86  NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141


>gnl|CDD|183720 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase;
           Provisional.
          Length = 256

 Score = 28.9 bits (65), Expect = 2.6
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 146 DEFMITNIADAIILSRLFAALFSH---GCIIVMTS 177
           D+    N+   ++LS  FA  +     G II +TS
Sbjct: 120 DKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTS 154


>gnl|CDD|178431 PLN02837, PLN02837, threonine-tRNA ligase.
          Length = 614

 Score = 27.9 bits (62), Expect = 5.1
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 279 FFDLCDRPLSANDFVEIANRFDVVIINDIPLLKED-RKDWIKRFIMLIDVFYEHKI 333
           ++D    PL+  D   I    D +I  ++PL++E+  ++  ++ IM I+  Y+ +I
Sbjct: 78  YYDFDMEPLTDKDLKRIKKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEI 133


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.142    0.414 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,608,498
Number of extensions: 437416
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 28
Length of query: 404
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 308
Effective length of database: 3,920,105
Effective search space: 1207392340
Effective search space used: 1207392340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.4 bits)