BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus
Liberibacter asiaticus str. psy62]
(404 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/404 (100%), Positives = 404/404 (100%)
Query: 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIK 60
MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIK
Sbjct: 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIK 60
Query: 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF 120
RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF
Sbjct: 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF 120
Query: 121 GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFI 180
GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFI
Sbjct: 121 GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFI 180
Query: 181 PENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMD 240
PENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMD
Sbjct: 181 PENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMD 240
Query: 241 KLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFD 300
KLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFD
Sbjct: 241 KLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFD 300
Query: 301 VVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQR 360
VVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQR
Sbjct: 301 VVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQR 360
Query: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFFNNSKFLI 404
TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFFNNSKFLI
Sbjct: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFFNNSKFLI 404
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 28.1 bits (61), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLI-ISSEENIEDLFPYKL 351
V++AN+F+V II DI L +R RF L F I + + + + L + L
Sbjct: 85 VKLANQFNVEIIGDIELFVRER-----RFSSLQSPF----IAVTGTNGKSSTVALISHVL 135
Query: 352 RKGAFEIQRTVSRLYEMFSAQYIGKNKIIIDAC 384
RK +++Q + + + +Y N+ + C
Sbjct: 136 RKNGYDVQLGGNIGLPILNLEYFSPNRFYVIEC 168
>gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 267
Score = 26.2 bits (56), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE--------ENIEDLFPYKL 351
N +PL + RKDWI ++ + + +H L ++++ E I+ + P +L
Sbjct: 10 NSLPLCADARKDWI--VVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRL 62
>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 57 RGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRK 116
R I+ ++ Y D+ + +N+ L+P R HF E + H + +Y+K
Sbjct: 133 RHIESSLANLDSAYAQVDIAK-----LNVISKLIPSYIDAR-HFKERISIAHQILDLYKK 186
Query: 117 KIEF-------GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSH 169
IE G + + L A ++ES + ++ N+ + L A F H
Sbjct: 187 NIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLH 246
Query: 170 GCIIVMTSNFIPENLY 185
+ ++NF P NLY
Sbjct: 247 -YMQKQSNNFQP-NLY 260
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 36/60 (60%)
Query: 294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRK 353
+++ R + ++ D PLL E RK+++ ++++ +E + ++S +++ E+ F + L K
Sbjct: 97 DLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSK 156
>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
Liberibacter asiaticus str. psy62]
Length = 500
Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 345 DLFPYKLRKGAFE-IQRTVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFF 397
DL P ++ + I++ + L + ++IG+ I + +L+S+KS+ D+F
Sbjct: 300 DLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYF 353
>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 652
Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 284 DRPLSANDFVEIANRFDVVIINDIPLLKE 312
++P S+++ +I + +I D P LK+
Sbjct: 111 EQPFSSDELAQIEKKMQEIIARDSPFLKQ 139
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 187 DEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIY 227
+ IN N++ IEL +K+EI+S+ E+ LP++
Sbjct: 83 ETINANIITGQIELSAQKIEILSV--------AEELPLPVF 115
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 23.9 bits (50), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 63 YCSMQGIYLHGDVGQGKSMLMNLFFA 88
YC HG G+ K +L+ +F A
Sbjct: 277 YCDKAITIAHGSTGEQKVVLVGIFLA 302
>gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 320
Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDF-FNNSKFLI 404
T +L++ F + + C I+ S KS+ND NN+K L+
Sbjct: 276 TKKKLFQ-FCQNVVAYGNCLAVGCVIVSSGKSINDIQINNAKLLV 319
>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 440
Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 128 PIPLVASSIALESRVLCFDEFMITNIADAI-----ILSRLFAALFSHGCIIVMTSNF 179
PI + A I +ES +L ++ + N+ AI + R+ A+ ++ G ++ F
Sbjct: 171 PISMFADKIGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYASGLATLVDDEF 227
>gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus
Liberibacter asiaticus str. psy62]
Length = 205
Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 322 IMLIDVFYEHKIGLIISSEENIEDLFPYKLR-KGAFEIQRTVSRLYEM 368
I+++ ++HKIG++ + +FP L+ KG I + L +
Sbjct: 79 IIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 23.1 bits (48), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 292 FVEIANRFDVVIINDI-PLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYK 350
+E+ ++ +V+I N + L +D+K ++ R + V+ EH++ + S ENI +FP
Sbjct: 58 LLEVPDQGNVIIANQLCNKLSDDKKSFL-RCSKIGFVYQEHRLLMDFSVIENI--IFPQI 114
Query: 351 L----RKGAFEIQRTVSRLYEMFSAQYIGK 376
+ K A+ QR + L M +QY +
Sbjct: 115 IAGINHKTAY--QRAMDLLSYMDMSQYANR 142
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.142 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,501
Number of Sequences: 1233
Number of extensions: 11079
Number of successful extensions: 56
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 20
length of query: 404
length of database: 328,796
effective HSP length: 76
effective length of query: 328
effective length of database: 235,088
effective search space: 77108864
effective search space used: 77108864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)