BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] (404 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/404 (100%), Positives = 404/404 (100%) Query: 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIK 60 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIK Sbjct: 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIK 60 Query: 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF 120 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF Sbjct: 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF 120 Query: 121 GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFI 180 GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFI Sbjct: 121 GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFI 180 Query: 181 PENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMD 240 PENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMD Sbjct: 181 PENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMD 240 Query: 241 KLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFD 300 KLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFD Sbjct: 241 KLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFD 300 Query: 301 VVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQR 360 VVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQR Sbjct: 301 VVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQR 360 Query: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFFNNSKFLI 404 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFFNNSKFLI Sbjct: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFFNNSKFLI 404 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 28.1 bits (61), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%) Query: 293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLI-ISSEENIEDLFPYKL 351 V++AN+F+V II DI L +R RF L F I + + + + L + L Sbjct: 85 VKLANQFNVEIIGDIELFVRER-----RFSSLQSPF----IAVTGTNGKSSTVALISHVL 135 Query: 352 RKGAFEIQRTVSRLYEMFSAQYIGKNKIIIDAC 384 RK +++Q + + + +Y N+ + C Sbjct: 136 RKNGYDVQLGGNIGLPILNLEYFSPNRFYVIEC 168 >gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 267 Score = 26.2 bits (56), Expect = 0.90, Method: Compositional matrix adjust. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 10/55 (18%) Query: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE--------ENIEDLFPYKL 351 N +PL + RKDWI ++ + + +H L ++++ E I+ + P +L Sbjct: 10 NSLPLCADARKDWI--VVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRL 62 >gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Query: 57 RGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRK 116 R I+ ++ Y D+ + +N+ L+P R HF E + H + +Y+K Sbjct: 133 RHIESSLANLDSAYAQVDIAK-----LNVISKLIPSYIDAR-HFKERISIAHQILDLYKK 186 Query: 117 KIEF-------GEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSH 169 IE G + + L A ++ES + ++ N+ + L A F H Sbjct: 187 NIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLH 246 Query: 170 GCIIVMTSNFIPENLY 185 + ++NF P NLY Sbjct: 247 -YMQKQSNNFQP-NLY 260 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 14/60 (23%), Positives = 36/60 (60%) Query: 294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRK 353 +++ R + ++ D PLL E RK+++ ++++ +E + ++S +++ E+ F + L K Sbjct: 97 DLSCRGEKIVFFDTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEENFLFILSK 156 >gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 500 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 345 DLFPYKLRKGAFE-IQRTVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDFF 397 DL P ++ + I++ + L + ++IG+ I + +L+S+KS+ D+F Sbjct: 300 DLLPLEIDEDFIRAIKKQIPELPDAKRERFIGEFGISLYDASVLVSDKSIADYF 353 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 17/29 (58%) Query: 284 DRPLSANDFVEIANRFDVVIINDIPLLKE 312 ++P S+++ +I + +I D P LK+ Sbjct: 111 EQPFSSDELAQIEKKMQEIIARDSPFLKQ 139 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%) Query: 187 DEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIY 227 + IN N++ IEL +K+EI+S+ E+ LP++ Sbjct: 83 ETINANIITGQIELSAQKIEILSV--------AEELPLPVF 115 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 23.9 bits (50), Expect = 5.3, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 63 YCSMQGIYLHGDVGQGKSMLMNLFFA 88 YC HG G+ K +L+ +F A Sbjct: 277 YCDKAITIAHGSTGEQKVVLVGIFLA 302 >gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 361 TVSRLYEMFSAQYIGKNKIIIDACKILLSNKSVNDF-FNNSKFLI 404 T +L++ F + + C I+ S KS+ND NN+K L+ Sbjct: 276 TKKKLFQ-FCQNVVAYGNCLAVGCVIVSSGKSINDIQINNAKLLV 319 >gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Query: 128 PIPLVASSIALESRVLCFDEFMITNIADAI-----ILSRLFAALFSHGCIIVMTSNF 179 PI + A I +ES +L ++ + N+ AI + R+ A+ ++ G ++ F Sbjct: 171 PISMFADKIGIESHLLTVEKSSMKNLERAINRAHLSVERMVASPYASGLATLVDDEF 227 >gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 322 IMLIDVFYEHKIGLIISSEENIEDLFPYKLR-KGAFEIQRTVSRLYEM 368 I+++ ++HKIG++ + +FP L+ KG I + L + Sbjct: 79 IIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 23.1 bits (48), Expect = 9.3, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 292 FVEIANRFDVVIINDI-PLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYK 350 +E+ ++ +V+I N + L +D+K ++ R + V+ EH++ + S ENI +FP Sbjct: 58 LLEVPDQGNVIIANQLCNKLSDDKKSFL-RCSKIGFVYQEHRLLMDFSVIENI--IFPQI 114 Query: 351 L----RKGAFEIQRTVSRLYEMFSAQYIGK 376 + K A+ QR + L M +QY + Sbjct: 115 IAGINHKTAY--QRAMDLLSYMDMSQYANR 142 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.142 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,501 Number of Sequences: 1233 Number of extensions: 11079 Number of successful extensions: 56 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 20 length of query: 404 length of database: 328,796 effective HSP length: 76 effective length of query: 328 effective length of database: 235,088 effective search space: 77108864 effective search space used: 77108864 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)