HHsearch alignment for GI: 254781048 and conserved domain: COG0565

>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=94.29  E-value=0.47  Score=26.94  Aligned_cols=81  Identities=20%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             CCEEEEEC---CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf             87289988---98136899999995799869999657881289883076205446887568526974-883789789995
Q gi|254781048|r    3 SNKIALIG---SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT   78 (320)
Q Consensus         3 ~~KV~IIG---aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit   78 (320)
T Consensus         4 ~i~iVLVep~~~gNIG~v-ARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~--~tL~eAl~d~~~v~aT   79 (242)
T COG0565           4 NIRIVLVEPSHPGNIGSV-ARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIV--DTLEEALADCDLVVAT   79 (242)
T ss_pred             CCEEEEECCCCCCCHHHH-HHHHHHCCCCEEEEECCCCC-CCHHHHHHHCCCHHHHCCCEEE--CCHHHHHCCCCEEEEE
T ss_conf             617999758887527999-99998679664899789889-8899999864666665067664--6799996078879980


Q ss_pred             CCCCCCCCC
Q ss_conf             566667655
Q gi|254781048|r   79 AGIPRKPSM   87 (320)
Q Consensus        79 ag~~~~~g~   87 (320)
T Consensus        80 tar~r~~~~   88 (242)
T COG0565          80 TARSRDLLR   88 (242)
T ss_pred             CCCCCCCCC
T ss_conf             566676655