HHsearch alignment for GI: 254781048 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.99 E-value=0.066 Score=32.47 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
T Consensus 1 ~~~KkvlV~GlG~SG~s~a~~L~~~g-~~v~~~D~~~~~~~~--~~~~~--------~~~~-~~~~~~~~~~d~vv~SPG 68 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSVARFLAQKG-VYVIGVDNSLEALQS--CPYIH--------ERYL-EGAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEECCCHHHHHH--CCHHH--------HHCC-CCHHHCCCCCCEEEECCC
T ss_conf 99866999808887999999999782-989998298145454--61455--------5405-623324234989998998
Q ss_pred CCCCCCCCHHH-HHHHHHHHHHHHHHHH--HHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 66676557467-8998899999999765--412667408871--484207---899998844998
Q gi|254781048|r 81 IPRKPSMSRDD-LLADNLKAIEKVGAGI--RKYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 81 ~~~~~g~~R~d-ll~~N~~i~~~i~~~i--~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
T Consensus 69 i~~~--~p~~~~a~~~~i~i~seiel~~~~~~~~~~~-~IaITGTNGKTTTt~ll~~iL~~~g~~ 130 (418)
T PRK00683 69 IKPY--HPWVEAAVALKIPVVTDIQLAFQTPEFQRYP-SLGITGSTGKTTTILFLEHLLRTLGIP 130 (418)
T ss_pred CCCC--CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCCCEEHHHHHHHHHHHCCCC
T ss_conf 5998--8999999986997540799997424414798-799976898660999999999867998