HHsearch alignment for GI: 254781048 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.87 E-value=0.12 Score=30.85 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=68.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
T Consensus 8 ~gk~v~v~GlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~----~~~----~g~~~---~~~~~~~~~~~~~iV~SPGI 75 (457)
T PRK01390 8 KGKTVALFGLGGSGLATARALKAGG-AEVIAWDDNPDSVAK----AAA----AGIAT---ADLRTADWSQFAALVLSPGV 75 (457)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHH----HHH----CCCCC---CCCCCCCCCCCCEEEECCCC
T ss_conf 8998999943699999999999789-979999399206689----987----59831---45541232038789999988
Q ss_pred CCCCCCCH--HHHH-HHHHHHHHHHHH---HHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 66765574--6789-988999999997---65412667408871--484207---899998844998
Q gi|254781048|r 82 PRKPSMSR--DDLL-ADNLKAIEKVGA---GIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 82 ~~~~g~~R--~dll-~~N~~i~~~i~~---~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
T Consensus 76 p~~~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~ 142 (457)
T PRK01390 76 PLTHPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRD 142 (457)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8656673199999998599186008999999873257898899928996498999999999973998