HHsearch alignment for GI: 254781048 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.43 E-value=0.087 Score=31.70 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE-ECCCHHHHCCCCEEEEEC
Q ss_conf 9987289988981368999999957998699996578812898830762054468875685-269748837897899955
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC-GTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~-~~~d~~~l~~aDivVita 79 (320)
T Consensus 5 ~~~k~vlV~GlG~sG~a~a~~L~~~G-~~V~~~D~~~~~~~~~--~l~~----~~~~~~~~~g~~~~~~~~~~d~vV~SP 77 (501)
T PRK02006 5 RQRPMVLVLGLGESGLAMARWCARHG-CRLRVADTREAPPNLA--ALQA----EGIDAEFVGGAFDPALLDGVELVALSP 77 (501)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHH--HHHH----CCCCCEEECCCCCHHHHCCCCEEEECC
T ss_conf 68983999833688999999999789-8499998999986199--9986----089818977889867846899999899
Q ss_pred CCCCC-CCCCH-HHHHH-HHHHHHHHHH------HHHH-HCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 66667-65574-67899-8899999999------7654-12667408871--484207---899998844998
Q gi|254781048|r 80 GIPRK-PSMSR-DDLLA-DNLKAIEKVG------AGIR-KYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 80 g~~~~-~g~~R-~dll~-~N~~i~~~i~------~~i~-~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
T Consensus 78 GI~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~ 150 (501)
T PRK02006 78 GLSPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKK 150 (501)
T ss_pred EECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 0088885431999999987995876899999887630222356874899938996687999999999976997