HHsearch alignment for GI: 254781048 and conserved domain: PRK02472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.91 E-value=0.0094 Score=37.97 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-H-CCCCEEEEE
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488-3-789789995
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-I-AEADVCIVT 78 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l-~~aDivVit 78 (320)
T Consensus 7 ~~~k~i~viGlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~l~~------~gi~~~~g~~~~~~~~~~~d~vV~S 79 (450)
T PRK02472 7 FQNKKVLVLGLAKSGYAAAKLLHKLG-ANVTVNDGKPFSENPAAQELLE------EGIKVICGSHPLELLDENFDLMVKN 79 (450)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHH------CCCEEEECCCHHHHCCCCCCEEEEC
T ss_conf 58998999977899999999999886-9899984886657989999996------7998997888078605788799989
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 56666765574678998899999999765412667408871--484207---8999988449986
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
T Consensus 80 PgI~~~~p-~~~~a~~~~i~v~~~~e-l~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~ 141 (450)
T PRK02472 80 PGIPYDNP-MVEEALEKGIPIITEVE-LAYLI-SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHG 141 (450)
T ss_pred CCCCCCCH-HHHHHHHCCCCEEEHHH-HHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 98799999-99999986996743878-88875-15978998279997319999999999749973