HHsearch alignment for GI: 254781048 and conserved domain: PRK02472

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.91  E-value=0.0094  Score=37.97  Aligned_cols=128  Identities=17%  Similarity=0.178  Sum_probs=67.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-H-CCCCEEEEE
Q ss_conf             99872899889813689999999579986999965788128988307620544688756852697488-3-789789995
Q gi|254781048|r    1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-I-AEADVCIVT   78 (320)
Q Consensus         1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l-~~aDivVit   78 (320)
T Consensus         7 ~~~k~i~viGlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~l~~------~gi~~~~g~~~~~~~~~~~d~vV~S   79 (450)
T PRK02472          7 FQNKKVLVLGLAKSGYAAAKLLHKLG-ANVTVNDGKPFSENPAAQELLE------EGIKVICGSHPLELLDENFDLMVKN   79 (450)
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHH------CCCEEEECCCHHHHCCCCCCEEEEC
T ss_conf             58998999977899999999999886-9899984886657989999996------7998997888078605788799989


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf             56666765574678998899999999765412667408871--484207---8999988449986
Q gi|254781048|r   79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS  138 (320)
Q Consensus        79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~  138 (320)
T Consensus        80 PgI~~~~p-~~~~a~~~~i~v~~~~e-l~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~  141 (450)
T PRK02472         80 PGIPYDNP-MVEEALEKGIPIITEVE-LAYLI-SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHG  141 (450)
T ss_pred             CCCCCCCH-HHHHHHHCCCCEEEHHH-HHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf             98799999-99999986996743878-88875-15978998279997319999999999749973