HHsearch alignment for GI: 254781048 and conserved domain: PRK03369

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.59  E-value=0.1  Score=31.17  Aligned_cols=124  Identities=16%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCE-EEECCCHHHHCCCCEEEEECC
Q ss_conf             9872899889813689999999579986999965788128988307620544688756-852697488378978999556
Q gi|254781048|r    2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQ-LCGTSDYSDIAEADVCIVTAG   80 (320)
Q Consensus         2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~-v~~~~d~~~l~~aDivVitag   80 (320)
T Consensus        11 ~Gk~V~V~GlG~sG~a~a~~L~~~G-~~v~~~D~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~d~vV~SPG   79 (487)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFG-ARPTVCDDDPDALRPH---AE-------RGVATVSSSDAVQQIADYALVVTSPG   79 (487)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHHH---HH-------CCCCEECCCCCHHHHCCCCEEEECCC
T ss_conf             9898999915683899999999786-9799998982577999---86-------59948637622656467788998995


Q ss_pred             CCCCCCCCHHHH-HHHHHHHHHHH--HHHHHH---CCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf             666765574678-99889999999--976541---2667408871--484207---8999988449986
Q gi|254781048|r   81 IPRKPSMSRDDL-LADNLKAIEKV--GAGIRK---YAPNSFVICI--TNPLDA---MVWALQKFSGLPS  138 (320)
Q Consensus        81 ~~~~~g~~R~dl-l~~N~~i~~~i--~~~i~~---~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~  138 (320)
T Consensus        80 I~~~~--p~l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~~  146 (487)
T PRK03369         80 FPPTA--PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRRS  146 (487)
T ss_pred             CCCCC--HHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             79989--99999998899076599999998744433676655999798872789999999998589985