HHsearch alignment for GI: 254781048 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.59 E-value=0.1 Score=31.17 Aligned_cols=124 Identities=16% Similarity=0.199 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCE-EEECCCHHHHCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756-852697488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQ-LCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~-v~~~~d~~~l~~aDivVitag 80 (320)
T Consensus 11 ~Gk~V~V~GlG~sG~a~a~~L~~~G-~~v~~~D~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~d~vV~SPG 79 (487)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFG-ARPTVCDDDPDALRPH---AE-------RGVATVSSSDAVQQIADYALVVTSPG 79 (487)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHHH---HH-------CCCCEECCCCCHHHHCCCCEEEECCC
T ss_conf 9898999915683899999999786-9799998982577999---86-------59948637622656467788998995
Q ss_pred CCCCCCCCHHHH-HHHHHHHHHHH--HHHHHH---CCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 666765574678-99889999999--976541---2667408871--484207---8999988449986
Q gi|254781048|r 81 IPRKPSMSRDDL-LADNLKAIEKV--GAGIRK---YAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 81 ~~~~~g~~R~dl-l~~N~~i~~~i--~~~i~~---~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
T Consensus 80 I~~~~--p~l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~~ 146 (487)
T PRK03369 80 FPPTA--PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRRS 146 (487)
T ss_pred CCCCC--HHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 79989--99999998899076599999998744433676655999798872789999999998589985