HHsearch alignment for GI: 254781048 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.53 E-value=0.12 Score=30.81 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CHHHHCCCCEEEEEC
Q ss_conf 9987289988981368999999957998699996578812898830762054468875685269-748837897899955
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DYSDIAEADVCIVTA 79 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~~~l~~aDivVita 79 (320)
T Consensus 3 ~~~k~v~viGlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~--~~~~~~~~---~-~i~~~~g~~~~~~~~~~d~vV~SP 75 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNG-AEVAAYDAELKAER--VAQIGKMF---D-GLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCH--HHHHHHCC---C-CCEEEECCCHHHHCCCCCEEEECC
T ss_conf 79998999998999999999999789-91999979999531--89997436---9-968993786365015999999899
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHHHHH--HHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCHHHHHH-HCCC
Q ss_conf 66667655746789-98899999999--765412667408871--484207---899998844998656110-0052
Q gi|254781048|r 80 GIPRKPSMSRDDLL-ADNLKAIEKVG--AGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPSHMVVG-MAGI 147 (320)
Q Consensus 80 g~~~~~g~~R~dll-~~N~~i~~~i~--~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~~rViG-~Gt~ 147 (320)
T Consensus 76 gI~~~~--p~l~~a~~~gi~i~~~~el~~~~~~~-~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~-~~~GNiG~p 148 (445)
T PRK04308 76 GISERQ--PDIEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT-VIAGNIGTP 148 (445)
T ss_pred CCCCCC--HHHHHHHHCCCCEECHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEEECCCC
T ss_conf 538999--99999997599571599999999841-69957999489983779999999999759962-998503752