HHsearch alignment for GI: 254781048 and conserved domain: PRK04308

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.53  E-value=0.12  Score=30.81  Aligned_cols=136  Identities=18%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CHHHHCCCCEEEEEC
Q ss_conf             9987289988981368999999957998699996578812898830762054468875685269-748837897899955
Q gi|254781048|r    1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DYSDIAEADVCIVTA   79 (320)
Q Consensus         1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~~~l~~aDivVita   79 (320)
T Consensus         3 ~~~k~v~viGlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~--~~~~~~~~---~-~i~~~~g~~~~~~~~~~d~vV~SP   75 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNG-AEVAAYDAELKAER--VAQIGKMF---D-GLVFYTGRLKDALDNGFDILALSP   75 (445)
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCH--HHHHHHCC---C-CCEEEECCCHHHHCCCCCEEEECC
T ss_conf             79998999998999999999999789-91999979999531--89997436---9-968993786365015999999899


Q ss_pred             CCCCCCCCCHHHHH-HHHHHHHHHHH--HHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCHHHHHH-HCCC
Q ss_conf             66667655746789-98899999999--765412667408871--484207---899998844998656110-0052
Q gi|254781048|r   80 GIPRKPSMSRDDLL-ADNLKAIEKVG--AGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPSHMVVG-MAGI  147 (320)
Q Consensus        80 g~~~~~g~~R~dll-~~N~~i~~~i~--~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~~rViG-~Gt~  147 (320)
T Consensus        76 gI~~~~--p~l~~a~~~gi~i~~~~el~~~~~~~-~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~-~~~GNiG~p  148 (445)
T PRK04308         76 GISERQ--PDIEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT-VIAGNIGTP  148 (445)
T ss_pred             CCCCCC--HHHHHHHHCCCCEECHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEEECCCC
T ss_conf             538999--99999997599571599999999841-69957999489983779999999999759962-998503752