HHsearch alignment for GI: 254781048 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=93.46 E-value=0.66 Score=25.96 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=73.5
Q ss_pred CCEEEEECCCCHHHH--HHHHHH---HC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CH----HHHCC
Q ss_conf 872899889813689--999999---57-998699996578812898830762054468875685269-74----88378
Q gi|254781048|r 3 SNKIALIGSGMIGGT--LAHLAV---LK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DY----SDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~--~a~~~~---~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~----~~l~~ 71 (320)
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQ-Lk~Ya~ilgvp~~v~~~~~~l~~al~~~~~ 288 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQ-LKTYAKIMGIPVKVAYDPKELAKALEQLAN 288 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCEEEEECCHHHHHHHHHHHCC
T ss_conf 7369998888875676999999999997299817999837677779999-999999719737984799999999987158
Q ss_pred CCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--HHHHHHHHHHCCCCHHHHHHHCCCH
Q ss_conf 978999-5566667655746789988999999997654126674088714842--0789999884499865611000525
Q gi|254781048|r 72 ADVCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL--DAMVWALQKFSGLPSHMVVGMAGIL 148 (320)
Q Consensus 72 aDivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv--Dv~~~~~~~~sg~~~~rViG~Gt~L 148 (320)
T Consensus 289 ~dlILIDTaG~s~~d~~-----------~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~T--Kl 355 (412)
T PRK05703 289 CDLILIDTAGRSQRDPR-----------LISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSRLPLDGLILT--KL 355 (412)
T ss_pred CCEEEEECCCCCCCCHH-----------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE--EE
T ss_conf 99799968988978999-----------999999998624887189997598998999999998467999879997--11
Q ss_pred HHHH
Q ss_conf 6899
Q gi|254781048|r 149 DSAR 152 (320)
Q Consensus 149 Ds~R 152 (320)
T Consensus 356 DEt~ 359 (412)
T PRK05703 356 DETS 359 (412)
T ss_pred CCCC
T ss_conf 2899