HHsearch alignment for GI: 254781048 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=93.46  E-value=0.66  Score=25.96  Aligned_cols=136  Identities=21%  Similarity=0.288  Sum_probs=73.5

Q ss_pred             CCEEEEECCCCHHHH--HHHHHH---HC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CH----HHHCC
Q ss_conf             872899889813689--999999---57-998699996578812898830762054468875685269-74----88378
Q gi|254781048|r    3 SNKIALIGSGMIGGT--LAHLAV---LK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DY----SDIAE   71 (320)
Q Consensus         3 ~~KV~IIGaG~VG~~--~a~~~~---~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~----~~l~~   71 (320)
T Consensus       210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQ-Lk~Ya~ilgvp~~v~~~~~~l~~al~~~~~  288 (412)
T PRK05703        210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQ-LKTYAKIMGIPVKVAYDPKELAKALEQLAN  288 (412)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCEEEEECCHHHHHHHHHHHCC
T ss_conf             7369998888875676999999999997299817999837677779999-999999719737984799999999987158


Q ss_pred             CCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--HHHHHHHHHHCCCCHHHHHHHCCCH
Q ss_conf             978999-5566667655746789988999999997654126674088714842--0789999884499865611000525
Q gi|254781048|r   72 ADVCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL--DAMVWALQKFSGLPSHMVVGMAGIL  148 (320)
Q Consensus        72 aDivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv--Dv~~~~~~~~sg~~~~rViG~Gt~L  148 (320)
T Consensus       289 ~dlILIDTaG~s~~d~~-----------~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~T--Kl  355 (412)
T PRK05703        289 CDLILIDTAGRSQRDPR-----------LISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSRLPLDGLILT--KL  355 (412)
T ss_pred             CCEEEEECCCCCCCCHH-----------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE--EE
T ss_conf             99799968988978999-----------999999998624887189997598998999999998467999879997--11


Q ss_pred             HHHH
Q ss_conf             6899
Q gi|254781048|r  149 DSAR  152 (320)
Q Consensus       149 Ds~R  152 (320)
T Consensus       356 DEt~  359 (412)
T PRK05703        356 DETS  359 (412)
T ss_pred             CCCC
T ss_conf             2899