HHsearch alignment for GI: 254781048 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=91.06 E-value=1.3 Score=24.07 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=74.2
Q ss_pred EEEEECCCCHHH--HHHHHHH---H-CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CH----HHHCCCC
Q ss_conf 289988981368--9999999---5-7998699996578812898830762054468875685269-74----8837897
Q gi|254781048|r 5 KIALIGSGMIGG--TLAHLAV---L-KKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DY----SDIAEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~--~~a~~~~---~-~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~----~~l~~aD 73 (320)
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQ-LktYa~IlgvPv~vv~~~~eL~~aL~~l~~~d 256 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQ-LRIYGKILGVPVHAVKDAADLRLALAELRNKH 256 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf 58986688876375899999999998389837999768754789999-99999875955999599999999999708999
Q ss_pred EEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEE--CCCCHHHHHHHHHHCCCCHHHHHHHCCCHH
Q ss_conf 8999-5566667655746789988999999997654126-67408871--484207899998844998656110005256
Q gi|254781048|r 74 VCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICI--TNPLDAMVWALQKFSGLPSHMVVGMAGILD 149 (320)
Q Consensus 74 ivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivv--tNPvDv~~~~~~~~sg~~~~rViG~Gt~LD 149 (320)
T Consensus 257 lILIDTaGrs~rD-----~~~~------e~l-~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~T--KLD 322 (404)
T PRK06995 257 IVLIDTVGMSQRD-----RMVS------EQI-AMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILT--KLD 322 (404)
T ss_pred EEEEECCCCCCCC-----HHHH------HHH-HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE--CCC
T ss_conf 9998099989768-----8899------999-9997357885289997798999999999998446999839983--040
Q ss_pred H
Q ss_conf 8
Q gi|254781048|r 150 S 150 (320)
Q Consensus 150 s 150 (320)
T Consensus 323 E 323 (404)
T PRK06995 323 E 323 (404)
T ss_pred C
T ss_conf 6