HHsearch alignment for GI: 254781048 and conserved domain: PRK08644
>PRK08644 thiamine biosynthesis protein ThiF; Provisional.
Probab=96.81 E-value=0.0052 Score=39.63 Aligned_cols=128 Identities=18% Similarity=0.232 Sum_probs=70.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
T Consensus 25 L~~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~---------Ve------~SNL~RQ---~~~~---~di-----G 78 (209)
T PRK08644 25 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV---------VE------PSNLNRQ---QYFI---SQI-----G 78 (209)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCE---------EC------CCCCCCC---CCCH---HHC-----C
T ss_conf 9629689988878899999999993898189988999---------01------5411037---5678---775-----9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH-HHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789-99988449986561100052568999999999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV-WALQKFSGLPSHMVVGMAGILDSARFRYFLAQ 159 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~-~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~ 159 (320)
T Consensus 79 ~~------K----------a~~a~~~l~~iNp~v~I~~~~~~l~~~n~~~l~--~~~D--iVi---DctDN~~tR~li~~ 135 (209)
T PRK08644 79 MF------K----------VEALKENLLRINPFVKIEVHQVKIDEDNIEELF--KDCD--IVV---EAFDNAETKAMLVE 135 (209)
T ss_pred CC------H----------HHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH--HCCC--EEE---ECCCCHHHHHHHHH
T ss_conf 75------6----------999999987448982899972248989999998--5799--999---99999999999999
Q ss_pred HCC--CCCCCCEEEEECCCC
Q ss_conf 719--873355056750788
Q gi|254781048|r 160 EFG--VSVESVTALVLGSHG 177 (320)
Q Consensus 160 ~l~--v~~~~V~~~ViGeHG 177 (320)
T Consensus 136 ~c~~~~~~plV~as~i~g~g 155 (209)
T PRK08644 136 TVLEKKGKKVVSASGMAGYG 155 (209)
T ss_pred HHHHHCCCCEEEEEEEEEEC
T ss_conf 99997799689996121575