HHsearch alignment for GI: 254781048 and conserved domain: PRK08644

>PRK08644 thiamine biosynthesis protein ThiF; Provisional.
Probab=96.81  E-value=0.0052  Score=39.63  Aligned_cols=128  Identities=18%  Similarity=0.232  Sum_probs=70.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf             99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r    1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG   80 (320)
Q Consensus         1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag   80 (320)
T Consensus        25 L~~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~---------Ve------~SNL~RQ---~~~~---~di-----G   78 (209)
T PRK08644         25 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV---------VE------PSNLNRQ---QYFI---SQI-----G   78 (209)
T ss_pred             HHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCE---------EC------CCCCCCC---CCCH---HHC-----C
T ss_conf             9629689988878899999999993898189988999---------01------5411037---5678---775-----9


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH-HHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             66676557467899889999999976541266740887148420789-99988449986561100052568999999999
Q gi|254781048|r   81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV-WALQKFSGLPSHMVVGMAGILDSARFRYFLAQ  159 (320)
Q Consensus        81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~-~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~  159 (320)
T Consensus        79 ~~------K----------a~~a~~~l~~iNp~v~I~~~~~~l~~~n~~~l~--~~~D--iVi---DctDN~~tR~li~~  135 (209)
T PRK08644         79 MF------K----------VEALKENLLRINPFVKIEVHQVKIDEDNIEELF--KDCD--IVV---EAFDNAETKAMLVE  135 (209)
T ss_pred             CC------H----------HHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH--HCCC--EEE---ECCCCHHHHHHHHH
T ss_conf             75------6----------999999987448982899972248989999998--5799--999---99999999999999


Q ss_pred             HCC--CCCCCCEEEEECCCC
Q ss_conf             719--873355056750788
Q gi|254781048|r  160 EFG--VSVESVTALVLGSHG  177 (320)
Q Consensus       160 ~l~--v~~~~V~~~ViGeHG  177 (320)
T Consensus       136 ~c~~~~~~plV~as~i~g~g  155 (209)
T PRK08644        136 TVLEKKGKKVVSASGMAGYG  155 (209)
T ss_pred             HHHHHCCCCEEEEEEEEEEC
T ss_conf             99997799689996121575