HHsearch alignment for GI: 254781048 and conserved domain: PRK11154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=98.30 E-value=4.7e-06 Score=59.37 Aligned_cols=145 Identities=21% Similarity=0.293 Sum_probs=80.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHH-CCCCEEEEEECCCCCHH-H--HHHHHHHHC---------CCCCCCCEEEECCCHHHH
Q ss_conf 8728998898136899999995-79986999965788128-9--883076205---------446887568526974883
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVL-KKLGDVVLLDIVDGMPR-G--KALDIAESS---------PVEGFGAQLCGTSDYSDI 69 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~-~~l~ei~L~D~~~~~~~-g--~~~Dl~~~~---------~~~~~~~~v~~~~d~~~l 69 (320)
T Consensus 309 i~kv~ViGaG~MG~gIA~~~a~~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~~ 387 (706)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYRGF 387 (706)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHHHH
T ss_conf 76799986473238999999998698-79999799999999999889999999861899989999986224100441231
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH-----
Q ss_conf 789789995566667655746789988999999997654126-67408871484207899998844998656110-----
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVG----- 143 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG----- 143 (320)
T Consensus 388 ~~~DlVIEAv~----------E----~~~~K~~v~~~le~~~~~~a--IlAtNTSsl~i~~la~~~~rP-~r~iG~HFfn 450 (706)
T PRK11154 388 KHADLVIEAVF----------E----DLALKQQMVADVEQNCAEHT--IFASNTSSLPIGQIAAAAARP-EQVIGLHYFS 450 (706)
T ss_pred CCCCEEEEECC----------C----CHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHCCCC-CEEEEEEECC
T ss_conf 56887999714----------5----28889999999996479885--895067677689999864784-1045544257
Q ss_pred -------------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -------------0052568999999999719873
Q gi|254781048|r 144 -------------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 -------------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
T Consensus 451 P~~~m~LVEVi~g~~Ts~et~~~~~~~~~~lgK~p 485 (706)
T PRK11154 451 PVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP 485 (706)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 74426427994378983899999999999759878