HHsearch alignment for GI: 254781048 and conserved domain: PRK11154

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=98.30  E-value=4.7e-06  Score=59.37  Aligned_cols=145  Identities=21%  Similarity=0.293  Sum_probs=80.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHH-CCCCEEEEEECCCCCHH-H--HHHHHHHHC---------CCCCCCCEEEECCCHHHH
Q ss_conf             8728998898136899999995-79986999965788128-9--883076205---------446887568526974883
Q gi|254781048|r    3 SNKIALIGSGMIGGTLAHLAVL-KKLGDVVLLDIVDGMPR-G--KALDIAESS---------PVEGFGAQLCGTSDYSDI   69 (320)
Q Consensus         3 ~~KV~IIGaG~VG~~~a~~~~~-~~l~ei~L~D~~~~~~~-g--~~~Dl~~~~---------~~~~~~~~v~~~~d~~~l   69 (320)
T Consensus       309 i~kv~ViGaG~MG~gIA~~~a~~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~~  387 (706)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYRGF  387 (706)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHHHH
T ss_conf             76799986473238999999998698-79999799999999999889999999861899989999986224100441231


Q ss_pred             CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH-----
Q ss_conf             789789995566667655746789988999999997654126-67408871484207899998844998656110-----
Q gi|254781048|r   70 AEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVG-----  143 (320)
Q Consensus        70 ~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG-----  143 (320)
T Consensus       388 ~~~DlVIEAv~----------E----~~~~K~~v~~~le~~~~~~a--IlAtNTSsl~i~~la~~~~rP-~r~iG~HFfn  450 (706)
T PRK11154        388 KHADLVIEAVF----------E----DLALKQQMVADVEQNCAEHT--IFASNTSSLPIGQIAAAAARP-EQVIGLHYFS  450 (706)
T ss_pred             CCCCEEEEECC----------C----CHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHCCCC-CEEEEEEECC
T ss_conf             56887999714----------5----28889999999996479885--895067677689999864784-1045544257


Q ss_pred             -------------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             -------------0052568999999999719873
Q gi|254781048|r  144 -------------MAGILDSARFRYFLAQEFGVSV  165 (320)
Q Consensus       144 -------------~Gt~LDs~R~~~~ia~~l~v~~  165 (320)
T Consensus       451 P~~~m~LVEVi~g~~Ts~et~~~~~~~~~~lgK~p  485 (706)
T PRK11154        451 PVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP  485 (706)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             74426427994378983899999999999759878