HHsearch alignment for GI: 254781048 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=91.77 E-value=1.1 Score=24.53 Aligned_cols=129 Identities=13% Similarity=0.149 Sum_probs=58.5
Q ss_pred EEEEECCCCHHH--HHHHHHHHCCC---CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH------CCCC
Q ss_conf 289988981368--99999995799---869999657881289883076205446887568526974883------7897
Q gi|254781048|r 5 KIALIGSGMIGG--TLAHLAVLKKL---GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI------AEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~--~~a~~~~~~~l---~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l------~~aD 73 (320)
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvE-QLktYa~Il~iPv~vv~--~~~el~~al~~~~~D 301 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE-QLKRYADTMGMPFYPVK--DIKKFKETLARDGSE 301 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHHHHHHHCCCEEEEE--CHHHHHHHHHHCCCC
T ss_conf 999989999888999999999999974992799952665377999-99999998599459951--899999999856999
Q ss_pred EEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8999-556666765574678998899999999765412667408871--4842078999988449986561100
Q gi|254781048|r 74 VCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDAMVWALQKFSGLPSHMVVGM 144 (320)
Q Consensus 74 ivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv~~~~~~~~sg~~~~rViG~ 144 (320)
T Consensus 302 lILIDTAGrS~rd~~--------~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~~lIfT 367 (432)
T PRK12724 302 LILIDTAGYSHRNLE--------QLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred EEEEECCCCCCCCHH--------HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999929998978999--------999999999863667885179999788998999999998426999849997