HHsearch alignment for GI: 254781048 and conserved domain: TIGR02354
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=97.58 E-value=0.00053 Score=46.07 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=74.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC------------------CCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99872899889813689999999579986999965------------------788128988307620544688756852
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI------------------VDGMPRGKALDIAESSPVEGFGAQLCG 62 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~------------------~~~~~~g~~~Dl~~~~~~~~~~~~v~~ 62 (320)
T Consensus 19 L~~a~VAicGlGGLGS~~AinLAR~GigkLiLvDfDvvepsNLnRQqY~~s~~G~~KteAlke~i~einPy~~ie~~d~k 98 (200)
T TIGR02354 19 LKKASVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKVSDVGKKKTEALKENISEINPYVEIEIIDEK 98 (200)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 50582789701611689999998730220256640432366561325787624862179999878650884212311021
Q ss_pred --CCCHHH-HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf --697488-3789789995566667655746789988999999997654126674088714
Q gi|254781048|r 63 --TSDYSD-IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 63 --~~d~~~-l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
T Consensus 99 i~E~N~~~~fkdaDiv~EAFDna---------------~aKam~~n~vl~~ykdk~li~AS 144 (200)
T TIGR02354 99 IDEENLDKLFKDADIVCEAFDNA---------------EAKAMLVNAVLEKYKDKKLIAAS 144 (200)
T ss_pred CCHHHHHHHHHCCCEEEECCCCH---------------HHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 27667987840674788716998---------------89999999999767864587602