HHsearch alignment for GI: 254781048 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.35 E-value=0.0048 Score=39.86 Aligned_cols=223 Identities=14% Similarity=0.157 Sum_probs=113.5
Q ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH----HHHCCC
Q ss_conf 9987289988-981368999999957-998699996578812898830762054468875685--26974----883789
Q gi|254781048|r 1 MKSNKIALIG-SGMIGGTLAHLAVLK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY----SDIAEA 72 (320)
Q Consensus 1 mk~~KV~IIG-aG~VG~~~a~~~~~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~----~~l~~a 72 (320)
T Consensus 2 ~~~K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~------~~i~f~~gDIrD~~~l~~~~~~v 75 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA------PCLRFFIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCC------CCEEEEECCCCCHHHHHHHHCCC
T ss_conf 993999990797799999999999729982899966864032889851689------87599967777889999763488
Q ss_pred CEEEEECCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC----CCCHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 789995566667655--746789988999999997654126674088714----84207899998844998656110005
Q gi|254781048|r 73 DVCIVTAGIPRKPSM--SRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT----NPLDAMVWALQKFSGLPSHMVVGMAG 146 (320)
Q Consensus 73 DivVitag~~~~~g~--~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt----NPvDv~~~~~~~~sg~~~~rViG~Gt 146 (320)
T Consensus 76 D~VfHaAA~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iSTDka~~P~n~y--GasK~---~~E~l~~~-- 148 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAANPINLY--GATKL---ASDKLFVA-- 148 (324)
T ss_pred CEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC--CCCHH---HHHHHHHH--
T ss_conf 899994627767267769899999997999999999885554317862268888996743--12367---67999999--
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 2568999999999719873355-056750788524651023544770-15543001587876799998455101588887
Q gi|254781048|r 147 ILDSARFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVSGI-PVSDLVKLGWTTQEKIDQIVKRTREGGAEIVG 224 (320)
Q Consensus 147 ~LDs~R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~g~-p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~ 224 (320)
T Consensus 149 -------~~~~~~~~~~~~~~vRygNV~gsrg-SViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a~----~ 216 (324)
T TIGR03589 149 -------ANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSL----E 216 (324)
T ss_pred -------HHHHHCCCCCEEEEEEECCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH----H
T ss_conf -------9985078886378863327518886-639999999983999744499980799888999999999999----8
Q ss_pred HHCCCCCCC---CCHHHHHHHHHHHHCC
Q ss_conf 515765432---2032323445545288
Q gi|254781048|r 225 LLRSGSAYY---APASSAIAIAESYLKN 249 (320)
Q Consensus 225 ~~~kg~t~~---~~a~a~~~ii~aIl~~ 249 (320)
T Consensus 217 ~-~~~GEifv~k~~s~~i~dla~~~~~~ 243 (324)
T TIGR03589 217 R-MLGGEIFVPKIPSMKITDLAEAMAPE 243 (324)
T ss_pred H-CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 2-88984998369702599999986046