HHsearch alignment for GI: 254781048 and conserved domain: cd01338

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00  E-value=0  Score=537.26  Aligned_cols=306  Identities=22%  Similarity=0.319  Sum_probs=270.9

Q ss_pred             CCCEEEEECC-CCHHHHHHHHHHHCCC------CEEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf             9872899889-8136899999995799------8699996578--81289883076205446887568526974883789
Q gi|254781048|r    2 KSNKIALIGS-GMIGGTLAHLAVLKKL------GDVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA   72 (320)
Q Consensus         2 k~~KV~IIGa-G~VG~~~a~~~~~~~l------~ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a   72 (320)
T Consensus         1 ~p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~-~~v~~~~~~~~a~~~a   79 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLL-AEIVITDDPNVAFKDA   79 (322)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCC-CCEEEECCHHHHHCCC
T ss_conf             970999989996899999999971113079972699997575756667657744532676545-8779748878983788


Q ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHC-CCCHHHHHHHCCCHHH
Q ss_conf             789995566667655746789988999999997654126-67408871484207899998844-9986561100052568
Q gi|254781048|r   73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFS-GLPSHMVVGMAGILDS  150 (320)
Q Consensus        73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~s-g~~~~rViG~Gt~LDs  150 (320)
T Consensus        80 DvVvitaG~prkPG~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvsNPvd~~~~v~~k~~~~~~~~~i~~~-t~LDs  158 (322)
T cd01338          80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH  158 (322)
T ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHEEEE-EHHHH
T ss_conf             78999368789989818999998689999999999975798838999578188899999997689974609996-34999


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEE-CCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCC
Q ss_conf             99999999971987335505675-07885246510235447701554300158787679999845510158888751576
Q gi|254781048|r  151 ARFRYFLAQEFGVSVESVTALVL-GSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSG  229 (320)
Q Consensus       151 ~R~~~~ia~~l~v~~~~V~~~Vi-GeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg  229 (320)
T Consensus       159 ~R~r~~la~~l~v~~~~V~~~vv~G~HGds~vp~~s~a~V~G~pl~~~~~d~~~---~~~e~~~~v~~~g~eIi~~kg~-  234 (322)
T cd01338         159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAW---LEDEFIPTVQKRGAAIIKARGA-  234 (322)
T ss_pred             HHHHHHHHHHHCCCHHHCEEEEEEECCCCCEEECCCCCEECCEEHHHHHCCHHH---HHHHHHHHHHCCHHHHHHHHCC-
T ss_conf             999999999849796775455897058882774212565988998995232556---6777899996469999865466-


Q ss_pred             CCCCCCHHHHHHHHHHHHC--CCCEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             5432203232344554528--897499999997364475-6347887699978722888479998899999999999999
Q gi|254781048|r  230 SAYYAPASSAIAIAESYLK--NKKNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATV  306 (320)
Q Consensus       230 ~t~~~~a~a~~~ii~aIl~--~~~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~  306 (320)
T Consensus       235 ~s~~~~a~a~~~~~~~~~~~~~~~~i~~~~v~~~G~YGi~~~v~~s~Pv~ig~~Gve~V~el~L~~~E~~~l~~S~~~L~  314 (322)
T cd01338         235 SSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELL  314 (322)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             36999999999999999608778855899998356668978839999999939989994487899999999999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781048|r  307 DLCNSCT  313 (320)
Q Consensus       307 ~~~~~~~  313 (320)
T Consensus       315 ee~~~~~  321 (322)
T cd01338         315 EEREAVK  321 (322)
T ss_pred             HHHHHHC
T ss_conf             9999754