HHsearch alignment for GI: 254781048 and conserved domain: cd01338
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=537.26 Aligned_cols=306 Identities=22% Similarity=0.319 Sum_probs=270.9
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCC------CEEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 9872899889-8136899999995799------8699996578--81289883076205446887568526974883789
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKL------GDVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l------~ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
T Consensus 1 ~p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~-~~v~~~~~~~~a~~~a 79 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLL-AEIVITDDPNVAFKDA 79 (322)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCC-CCEEEECCHHHHHCCC
T ss_conf 970999989996899999999971113079972699997575756667657744532676545-8779748878983788
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHC-CCCHHHHHHHCCCHHH
Q ss_conf 789995566667655746789988999999997654126-67408871484207899998844-9986561100052568
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFS-GLPSHMVVGMAGILDS 150 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~s-g~~~~rViG~Gt~LDs 150 (320)
T Consensus 80 DvVvitaG~prkPG~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvsNPvd~~~~v~~k~~~~~~~~~i~~~-t~LDs 158 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH 158 (322)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHEEEE-EHHHH
T ss_conf 78999368789989818999998689999999999975798838999578188899999997689974609996-34999
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEE-CCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCC
Q ss_conf 99999999971987335505675-07885246510235447701554300158787679999845510158888751576
Q gi|254781048|r 151 ARFRYFLAQEFGVSVESVTALVL-GSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSG 229 (320)
Q Consensus 151 ~R~~~~ia~~l~v~~~~V~~~Vi-GeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg 229 (320)
T Consensus 159 ~R~r~~la~~l~v~~~~V~~~vv~G~HGds~vp~~s~a~V~G~pl~~~~~d~~~---~~~e~~~~v~~~g~eIi~~kg~- 234 (322)
T cd01338 159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAW---LEDEFIPTVQKRGAAIIKARGA- 234 (322)
T ss_pred HHHHHHHHHHHCCCHHHCEEEEEEECCCCCEEECCCCCEECCEEHHHHHCCHHH---HHHHHHHHHHCCHHHHHHHHCC-
T ss_conf 999999999849796775455897058882774212565988998995232556---6777899996469999865466-
Q ss_pred CCCCCCHHHHHHHHHHHHC--CCCEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 5432203232344554528--897499999997364475-6347887699978722888479998899999999999999
Q gi|254781048|r 230 SAYYAPASSAIAIAESYLK--NKKNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATV 306 (320)
Q Consensus 230 ~t~~~~a~a~~~ii~aIl~--~~~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~ 306 (320)
T Consensus 235 ~s~~~~a~a~~~~~~~~~~~~~~~~i~~~~v~~~G~YGi~~~v~~s~Pv~ig~~Gve~V~el~L~~~E~~~l~~S~~~L~ 314 (322)
T cd01338 235 SSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELL 314 (322)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 36999999999999999608778855899998356668978839999999939989994487899999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781048|r 307 DLCNSCT 313 (320)
Q Consensus 307 ~~~~~~~ 313 (320)
T Consensus 315 ee~~~~~ 321 (322)
T cd01338 315 EEREAVK 321 (322)
T ss_pred HHHHHHC
T ss_conf 9999754