HHsearch alignment for GI: 254781048 and conserved domain: cd01339

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00  E-value=0  Score=646.54  Aligned_cols=300  Identities=59%  Similarity=1.019  Sum_probs=292.4

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCCC
Q ss_conf             89988981368999999957998699996578812898830762054468875685269748837897899955666676
Q gi|254781048|r    6 IALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRKP   85 (320)
Q Consensus         6 V~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~~   85 (320)
T Consensus         1 V~IIGaG~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~~daDvvVitaG~~~k~   80 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRKP   80 (300)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCCCCCC
T ss_conf             98989688899999999857996799980999800579887761320158985899478879947998999906778998


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             55746789988999999997654126674088714842078999988449986561100052568999999999719873
Q gi|254781048|r   86 SMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSV  165 (320)
Q Consensus        86 g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~  165 (320)
T Consensus        81 g~tR~dLl~~N~~I~~~i~~~i~~~~p~~i~lvvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~la~~l~v~~  160 (300)
T cd01339          81 GMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSV  160 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHCCCH
T ss_conf             99889999988999999999999659984899827938999999999729884552333311788999999999959995


Q ss_pred             CCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             35505675078852465102354477015543001587876799998455101588887515765432203232344554
Q gi|254781048|r  166 ESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAIAES  245 (320)
Q Consensus       166 ~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ii~a  245 (320)
T Consensus       161 ~~V~~~ViGeHGds~vp~wS~~~v~G~~~~~~~-----~~~~~~~i~~~v~~~g~~ii~~kgkgst~~~ia~a~~~iv~a  235 (300)
T cd01339         161 KDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELI-----TKEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEMVEA  235 (300)
T ss_pred             HHCEEEEEECCCCCEEEEEEEEEECCCCHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             460676665478856765677588883267867-----988899999999854999998625572666399999999999


Q ss_pred             HHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             52889749999999736447563478876999787228884799988999999999999999999
Q gi|254781048|r  246 YLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCN  310 (320)
Q Consensus       246 Il~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~  310 (320)
T Consensus       236 Il~d~~~v~pvs~~~~g~yG~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~sa~~ik~~ie  300 (300)
T cd01339         236 ILKDKKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKELID  300 (300)
T ss_pred             HHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             96478978999998447778604799989998588318985899999999999999999998629