HHsearch alignment for GI: 254781048 and conserved domain: cd01488
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.99 E-value=0.1 Score=31.19 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=29.4
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 28998898136899999995799869999657
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
T Consensus 1 kvlvvG~GglG~e~~k~la~~Gvg~i~ivD~d 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98999288889999999998489859997399