HHsearch alignment for GI: 254781048 and conserved domain: cd01870

>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=92.41  E-value=0.79  Score=25.48  Aligned_cols=107  Identities=20%  Similarity=0.298  Sum_probs=57.6

Q ss_pred             CCEEEEECCCCHHHH-HHHHHHHCCCCE--------EEE--EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf             872899889813689-999999579986--------999--965788128988307620544688756852697488378
Q gi|254781048|r    3 SNKIALIGSGMIGGT-LAHLAVLKKLGD--------VVL--LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAE   71 (320)
Q Consensus         3 ~~KV~IIGaG~VG~~-~a~~~~~~~l~e--------i~L--~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~   71 (320)
T Consensus         1 r~Ki~liGd~~VGKTsli~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~---v~l~iwDtaG~e~-----~~~~~~~~~~~   72 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ---VELALWDTAGQED-----YDRLRPLSYPD   72 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCCC-----CCCCHHHHHCC
T ss_conf             909999998996699999999709899984784368999999999999---9999997776613-----23240443148


Q ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf             9789995566667655746789988999999997654126674088714842078
Q gi|254781048|r   72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM  126 (320)
Q Consensus        72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~  126 (320)
T Consensus        73 a~~~ilvydi~~-----~~S-f~-~~--~~~w~~~i~~~~~~~piilVgnK~DL~  118 (175)
T cd01870          73 TDVILMCFSIDS-----PDS-LE-NI--PEKWTPEVKHFCPNVPIILVGNKKDLR  118 (175)
T ss_pred             CCEEEEEEECCC-----HHH-HH-HH--HHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             878999986598-----799-99-99--999999999729899899998724334