HHsearch alignment for GI: 254781048 and conserved domain: cd01870
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=92.41 E-value=0.79 Score=25.48 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCEEEEECCCCHHHH-HHHHHHHCCCCE--------EEE--EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf 872899889813689-999999579986--------999--965788128988307620544688756852697488378
Q gi|254781048|r 3 SNKIALIGSGMIGGT-LAHLAVLKKLGD--------VVL--LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~-~a~~~~~~~l~e--------i~L--~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~ 71 (320)
T Consensus 1 r~Ki~liGd~~VGKTsli~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~---v~l~iwDtaG~e~-----~~~~~~~~~~~ 72 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ---VELALWDTAGQED-----YDRLRPLSYPD 72 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCCC-----CCCCHHHHHCC
T ss_conf 909999998996699999999709899984784368999999999999---9999997776613-----23240443148
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 9789995566667655746789988999999997654126674088714842078
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
T Consensus 73 a~~~ilvydi~~-----~~S-f~-~~--~~~w~~~i~~~~~~~piilVgnK~DL~ 118 (175)
T cd01870 73 TDVILMCFSIDS-----PDS-LE-NI--PEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred CCEEEEEEECCC-----HHH-HH-HH--HHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 878999986598-----799-99-99--999999999729899899998724334