HHsearch alignment for GI: 254781048 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=91.43  E-value=0.23  Score=28.93  Aligned_cols=113  Identities=16%  Similarity=0.209  Sum_probs=58.5

Q ss_pred             CCCCEEEEECCCCHHH-HHHHHHHHCCCC-E--EEEEECCC--CCHH--HHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf             9987289988981368-999999957998-6--99996578--8128--9883076205446887568526974883789
Q gi|254781048|r    1 MKSNKIALIGSGMIGG-TLAHLAVLKKLG-D--VVLLDIVD--GMPR--GKALDIAESSPVEGFGAQLCGTSDYSDIAEA   72 (320)
Q Consensus         1 mk~~KV~IIGaG~VG~-~~a~~~~~~~l~-e--i~L~D~~~--~~~~--g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a   72 (320)
T Consensus         1 m~~~KivlvGd~~VGKTsli~r~~~~~F~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~-----~~~~~~~~~~a   75 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY-----DRLRTLSYPQT   75 (191)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCH-----HHHHHHHHCCC
T ss_conf             9518999999999899999999972999986466210004678999999999999858887003-----56778774478


Q ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf             7899955666676557467899889999999976541266740887148420789
Q gi|254781048|r   73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV  127 (320)
Q Consensus        73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~  127 (320)
T Consensus        76 ~~~ilvfdvt~~-----~Sf~--~v~--~~w~~ei~~~~~~~piiLvGnK~DL~~  121 (191)
T cd01875          76 NVFIICFSIASP-----SSYE--NVR--HKWHPEVCHHCPNVPILLVGTKKDLRN  121 (191)
T ss_pred             CEEEEEEECCCH-----HHHH--HHH--HHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             689999857977-----8899--999--999999997096997899988801023