HHsearch alignment for GI: 254781048 and conserved domain: cd04129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=92.58 E-value=0.28 Score=28.44 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=58.2
Q ss_pred CCEEEEECCCCHHH-HHHHHHHHCCCC--------EEEEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf 87289988981368-999999957998--------69999657881289--88307620544688756852697488378
Q gi|254781048|r 3 SNKIALIGSGMIGG-TLAHLAVLKKLG--------DVVLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~-~~a~~~~~~~l~--------ei~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~ 71 (320)
T Consensus 1 r~KivllGd~~VGKTsLi~r~~~~~f~~~y~pTi~~~~~~~i~---v~~~~v~l~iwDTaG~e~~~~-----~~~~~~~~ 72 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCR---VDGKPVQLALWDTAGQEEYER-----LRPLSYSK 72 (187)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEE---ECCEEEEEEEEECCCCCCCCC-----CCCCEECC
T ss_conf 9199999989976899999998298999878866789899999---999999999997888703454-----60412338
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 9789995566667655746789988999999997654126674088714842078
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
T Consensus 73 a~~~ilvydi~~~------~Sf~-~~~--~~w~~~~~~~~~~~piilVGnK~DL~ 118 (187)
T cd04129 73 AHVILIGFAVDTP------DSLE-NVR--TKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred CCEEEEECCCCCH------HHHH-HHH--HHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 8589997026986------6799-999--99999999858799889998860011