HHsearch alignment for GI: 254781048 and conserved domain: cd04132

>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=90.31  E-value=0.66  Score=25.98  Aligned_cols=110  Identities=17%  Similarity=0.222  Sum_probs=57.0

Q ss_pred             CEEEEECCCCHH-HHHHHHHHHCCCCE-----E-EEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCE
Q ss_conf             728998898136-89999999579986-----9-999657881289--88307620544688756852697488378978
Q gi|254781048|r    4 NKIALIGSGMIG-GTLAHLAVLKKLGD-----V-VLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADV   74 (320)
Q Consensus         4 ~KV~IIGaG~VG-~~~a~~~~~~~l~e-----i-~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDi   74 (320)
T Consensus         1 ~KivlvGd~~VGKTsli~r~~~~~F~~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~~-----~~l~~~~~~~a~~   75 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----DRLRPLSYPDVDV   75 (187)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCC-----CCCHHHHHHHCCE
T ss_conf             98999994997699999999639899975896647999999954998999999969997110-----5343445300348


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf             99955666676557467899889999999976541266740887148420789
Q gi|254781048|r   75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV  127 (320)
Q Consensus        75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~  127 (320)
T Consensus        76 ~ilvydit~~-----~S-f~-~i~--~~W~~~i~~~~~~~piilVgnK~DL~~  119 (187)
T cd04132          76 LLICYAVDNP-----TS-LD-NVE--DKWFPEVNHFCPGTPIMLVGLKTDLRK  119 (187)
T ss_pred             EEEEECCCCH-----HH-HH-HHH--HHHHHHHHHHCCCCCEEEEEECCHHHH
T ss_conf             8895036876-----77-99-999--999999998689999799998722122