HHsearch alignment for GI: 254781048 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=90.31 E-value=0.66 Score=25.98 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=57.0
Q ss_pred CEEEEECCCCHH-HHHHHHHHHCCCCE-----E-EEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCE
Q ss_conf 728998898136-89999999579986-----9-999657881289--88307620544688756852697488378978
Q gi|254781048|r 4 NKIALIGSGMIG-GTLAHLAVLKKLGD-----V-VLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADV 74 (320)
Q Consensus 4 ~KV~IIGaG~VG-~~~a~~~~~~~l~e-----i-~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDi 74 (320)
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~F~~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~~-----~~l~~~~~~~a~~ 75 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----DRLRPLSYPDVDV 75 (187)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCC-----CCCHHHHHHHCCE
T ss_conf 98999994997699999999639899975896647999999954998999999969997110-----5343445300348
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 99955666676557467899889999999976541266740887148420789
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
T Consensus 76 ~ilvydit~~-----~S-f~-~i~--~~W~~~i~~~~~~~piilVgnK~DL~~ 119 (187)
T cd04132 76 LLICYAVDNP-----TS-LD-NVE--DKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred EEEEECCCCH-----HH-HH-HHH--HHHHHHHHHHCCCCCEEEEEECCHHHH
T ss_conf 8895036876-----77-99-999--999999998689999799998722122