HHsearch alignment for GI: 254781048 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=90.50 E-value=1.4 Score=23.81 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=59.2
Q ss_pred CEEEEECCCCHHHH-HHHHHHHCCCCE-----E---E--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 72899889813689-999999579986-----9---9--99657881289883076205446887568526974883789
Q gi|254781048|r 4 NKIALIGSGMIGGT-LAHLAVLKKLGD-----V---V--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 4 ~KV~IIGaG~VG~~-~a~~~~~~~l~e-----i---~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
T Consensus 6 ~KivlvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~~~i~~~---~v~l~iwDTaGqe~f~-----~l~~~~y~~~ 77 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQ---RIELSLWDTSGSPYYD-----NVRPLSYPDS 77 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCE---EEEEEEEECCCCHHCC-----CCCHHHHCCC
T ss_conf 8999999999899999999983999998687353226899999999---9999999689862012-----2125551278
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 7899955666676557467899889999999976541266740887148420789
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
T Consensus 78 ~~~ilvydit~------~~Sf~~---v~~~W~~ei~~~~~~~~iiLVGnK~DLr~ 123 (182)
T cd04172 78 DAVLICFDISR------PETLDS---VLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred CEEEEEEECCC------HHHHHH---HHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 78999964897------788999---99999999998687998899961710124