HHsearch alignment for GI: 254781048 and conserved domain: cd05197
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.87 E-value=6.5e-19 Score=142.86 Aligned_cols=301 Identities=18% Similarity=0.142 Sum_probs=188.1
Q ss_pred EEEEECCCCHHHH--HHHHH-HH-CCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEE
Q ss_conf 2899889813689--99999-95-799--869999657881289883076205446887568526974-88378978999
Q gi|254781048|r 5 KIALIGSGMIGGT--LAHLA-VL-KKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIV 77 (320)
Q Consensus 5 KV~IIGaG~VG~~--~a~~~-~~-~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVi 77 (320)
T Consensus 2 KI~iIGaGS~-~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 80 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred EEEEECCCHH-HHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf 7999898368-789999999838433788989998899999999999999999961998389997899998568999999
Q ss_pred ECCC------------CCCCCCC--------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 5566------------6676557--------4678998899999999765412667408871484207899998844998
Q gi|254781048|r 78 TAGI------------PRKPSMS--------RDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLP 137 (320)
Q Consensus 78 tag~------------~~~~g~~--------R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~ 137 (320)
T Consensus 81 ~irvGg~~~r~~De~IplkyGv~gqeT~G~GG~~~alRtIPv~l~ia~~i~e~cP~AwliNytNP~~ivt~al~~~~~-- 158 (425)
T cd05197 81 QFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVP-- 158 (425)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC--
T ss_conf 887567057899986898759144437778899999842999999999999869980899737878999999997488--
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHH----HHHCCC-----------
Q ss_conf 65611000525689999999997198733550567507885246510235447701554----300158-----------
Q gi|254781048|r 138 SHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSD----LVKLGW----------- 202 (320)
Q Consensus 138 ~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~----~~~~~~----------- 202 (320)
T Consensus 159 ~~k~vGL-Ch~-~~~~~~~la~~lg~~~~~i~~~~~Gl---NH~~w~~~~~~~G~D~~p~L~~~~~~~~~~~~~~~~~~~ 233 (425)
T cd05197 159 PEKAVGL-CNV-PIGVMEIVAKLLGESEEKVDWQYAGL---NHGIWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENPFVD 233 (425)
T ss_pred CCCEEEE-CCC-HHHHHHHHHHHHCCCHHHCEEEEEEE---CCHHHHEEEEECCEECHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 8848985-866-79999999999499889967999976---646250210689920468999999861567655540134
Q ss_pred -------------------------CCHHHHHHH-------------HHHHHCCHHHHHHHH-CCCC----CCC---CCH
Q ss_conf -------------------------787679999-------------845510158888751-5765----432---203
Q gi|254781048|r 203 -------------------------TTQEKIDQI-------------VKRTREGGAEIVGLL-RSGS----AYY---APA 236 (320)
Q Consensus 203 -------------------------~~~~~~~~l-------------~~~v~~~g~~ii~~~-~kg~----t~~---~~a 236 (320)
T Consensus 234 ~~~~~~~~~~~~~~~~p~~yl~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (425)
T cd05197 234 QLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKRGGRKYS 313 (425)
T ss_pred HHCCCHHHHHHCCCEEECCCCCEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHH
T ss_conf 32000699985389288477432111276665444321433322788988899999986545423460333125776268
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCC-CC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2323445545288974999999973644-75-63478876999787228884799988999999999999999999999
Q gi|254781048|r 237 SSAIAIAESYLKNKKNLLPCAAHLSGQY-GV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSCT 313 (320)
Q Consensus 237 ~a~~~ii~aIl~~~~~v~~~s~~~~g~y-g~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~~ 313 (320)
T Consensus 314 e~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp~d~vVEVpc~Vd~~Gi~P~~vg~lP~~~~~Li~~~~~~e~ltveAa~ 392 (425)
T cd05197 314 EAAIPLIRALLNDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKVGPLDRFVKGLLRQRKMRERLALEAFL 392 (425)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998679982799976789878899999789974798489850340698979999999999999999999999