HHsearch alignment for GI: 254781048 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.62 E-value=0.00038 Score=47.03 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756852697-488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDivVitag 80 (320)
T Consensus 11 ~~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~~~~l~~~l~~~DivI~aT~ 84 (134)
T pfam01488 11 KGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFG------GEEVEALPLDELEELLAEADIVISATS 84 (134)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC------CCCEEEEECHHHHHHHHHCCEEEEECC
T ss_conf 48989999960999999999997599889995475789999999849------972589851354413631999999259
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH
Q ss_conf 666765574678998899999999765412667408871484207899
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVW 128 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~ 128 (320)
T Consensus 85 s~~~-ii~~~~~------------~---~~~~~~~iiDLavPrnvd~~ 116 (134)
T pfam01488 85 APTP-IITKEMV------------E---EALKGLLFVDIAVPRDIEPE 116 (134)
T ss_pred CCCC-EECHHHH------------H---HCCCCEEEEEECCCCCCCHH
T ss_conf 9973-6489999------------7---44398599983478886654