HHsearch alignment for GI: 254781049 and conserved domain: COG1181

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=97.27  E-value=0.0014  Score=43.25  Aligned_cols=94  Identities=22%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHCCCCCCCCEEECC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf             79999999986898888157479----99999999872998699971213687656565567777777079958999999
Q gi|254781049|r    5 EYQAKALLRKYNVPVAKGVVISS----VHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI   80 (398)
Q Consensus         5 EyqaK~lL~~~GIpvp~g~~a~s----~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~   80 (398)
T Consensus       104 k~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~-~Vkp~-----~~--------gS-Svg~~~v~~~~d~~  168 (317)
T COG1181         104 KIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPL-FVKPA-----RE--------GS-SVGRSPVNVEGDLQ  168 (317)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCE-EEECC-----CC--------EE-EEEEEECCEECCHH
T ss_conf             999988998678651235675334520478887741468878-99858-----73--------11-36799883504369


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC
Q ss_conf             99998618765442122222443301103455565058999998347
Q gi|254781049|r   81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT  127 (398)
Q Consensus        81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~  127 (398)
T Consensus       169 ~~~e~a~~~d-------------~~vl~e~~~~-~rei~v~vl~~~~  201 (317)
T COG1181         169 SALELAFKYD-------------RDVLREQGIT-GREIEVGVLGNDY  201 (317)
T ss_pred             HHHHHHHHHC-------------CCCEECCCCC-CCEEEEEECCCCC
T ss_conf             9999999847-------------8512003776-6558986358865