HHsearch alignment for GI: 254781049 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=97.27 E-value=0.0014 Score=43.25 Aligned_cols=94 Identities=22% Similarity=0.202 Sum_probs=65.2
Q ss_pred HHHHHHHHHHCCCCCCCCEEECC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 79999999986898888157479----99999999872998699971213687656565567777777079958999999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISS----VHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s----~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398)
T Consensus 104 k~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~-~Vkp~-----~~--------gS-Svg~~~v~~~~d~~ 168 (317)
T COG1181 104 KIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPL-FVKPA-----RE--------GS-SVGRSPVNVEGDLQ 168 (317)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCE-EEECC-----CC--------EE-EEEEEECCEECCHH
T ss_conf 999988998678651235675334520478887741468878-99858-----73--------11-36799883504369
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC
Q ss_conf 99998618765442122222443301103455565058999998347
Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT 127 (398)
Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~ 127 (398)
T Consensus 169 ~~~e~a~~~d-------------~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 169 SALELAFKYD-------------RDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred HHHHHHHHHC-------------CCCEECCCCC-CCEEEEEECCCCC
T ss_conf 9999999847-------------8512003776-6558986358865