HHsearch alignment for GI: 254781049 and conserved domain: PRK01372
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=99.10 E-value=1.4e-08 Score=76.30 Aligned_cols=166 Identities=23% Similarity=0.249 Sum_probs=107.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398)
T Consensus 99 K~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~l~~P~-iVKP-~~~-G-----------SS-iGv~~V~~~~el~~ai~ 163 (304)
T PRK01372 99 KLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDKLGLPL-VVKP-ARE-G-----------SS-VGVTKVKEADELPAALE 163 (304)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCE-EEEE-CCC-C-----------CC-CCEEEECCHHHHHHHHH
T ss_conf 89999999986999898499865313999987618987-9976-688-8-----------66-65389669889999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCC-CHHHHHHHCHHHHEEEECCCCC
Q ss_conf 861876544212222244330110345556505899999834778048998447884-0245557483122033214445
Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGM-DIEEVAKDYPQKIFKLLIDPLI 163 (398)
Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGv-dIE~va~~~p~~I~~~~id~~~ 163 (398)
T Consensus 164 ~a~~~----------~---~~vLvE~~I~G-rEitv~Vlg~~~lp-~~eI~-~~~~fyDy~a--KY~~~----------- 214 (304)
T PRK01372 164 LAFKY----------D---DEVLVEKYIKG-RELTVAVLGGKALP-VIRIV-PPGEFYDYEA--KYLAG----------- 214 (304)
T ss_pred HHHHC----------C---CCCEEEEEECC-EEEEEEEECCCCCC-EEEEE-CCCCCCCHHH--CCCCC-----------
T ss_conf 98744----------8---86254502565-69999998997775-38994-5998757766--12557-----------
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 789578887887519888998859999999989999559751023267990599679940
Q gi|254781049|r 164 GVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLD 223 (398)
Q Consensus 164 gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlD 223 (398)
T Consensus 215 -----~s~~-~~Pa~l~~~~~~~i~~~a~~~~~aLg~~g~aRvD---f~~~~~g~~~~lE 265 (304)
T PRK01372 215 -----DTQY-LCPAGLPAELEAELQALALRAYKALGCRGWGRVD---FMLDEDGKPYLLE 265 (304)
T ss_pred -----CCCE-ECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE---EEEECCCCEEEEE
T ss_conf -----7411-0068999999999999999999984997369889---9990799789998