HHsearch alignment for GI: 254781049 and conserved domain: PRK01372

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=99.10  E-value=1.4e-08  Score=76.30  Aligned_cols=166  Identities=23%  Similarity=0.249  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf             79999999986898888157479999999998729986999712136876565655677777770799589999999999
Q gi|254781049|r    5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR   84 (398)
Q Consensus         5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~   84 (398)
T Consensus        99 K~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~l~~P~-iVKP-~~~-G-----------SS-iGv~~V~~~~el~~ai~  163 (304)
T PRK01372         99 KLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDKLGLPL-VVKP-ARE-G-----------SS-VGVTKVKEADELPAALE  163 (304)
T ss_pred             HHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCE-EEEE-CCC-C-----------CC-CCEEEECCHHHHHHHHH
T ss_conf             89999999986999898499865313999987618987-9976-688-8-----------66-65389669889999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCC-CHHHHHHHCHHHHEEEECCCCC
Q ss_conf             861876544212222244330110345556505899999834778048998447884-0245557483122033214445
Q gi|254781049|r   85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGM-DIEEVAKDYPQKIFKLLIDPLI  163 (398)
Q Consensus        85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGv-dIE~va~~~p~~I~~~~id~~~  163 (398)
T Consensus       164 ~a~~~----------~---~~vLvE~~I~G-rEitv~Vlg~~~lp-~~eI~-~~~~fyDy~a--KY~~~-----------  214 (304)
T PRK01372        164 LAFKY----------D---DEVLVEKYIKG-RELTVAVLGGKALP-VIRIV-PPGEFYDYEA--KYLAG-----------  214 (304)
T ss_pred             HHHHC----------C---CCCEEEEEECC-EEEEEEEECCCCCC-EEEEE-CCCCCCCHHH--CCCCC-----------
T ss_conf             98744----------8---86254502565-69999998997775-38994-5998757766--12557-----------


Q ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf             789578887887519888998859999999989999559751023267990599679940
Q gi|254781049|r  164 GVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLD  223 (398)
Q Consensus       164 gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlD  223 (398)
T Consensus       215 -----~s~~-~~Pa~l~~~~~~~i~~~a~~~~~aLg~~g~aRvD---f~~~~~g~~~~lE  265 (304)
T PRK01372        215 -----DTQY-LCPAGLPAELEAELQALALRAYKALGCRGWGRVD---FMLDEDGKPYLLE  265 (304)
T ss_pred             -----CCCE-ECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE---EEEECCCCEEEEE
T ss_conf             -----7411-0068999999999999999999984997369889---9990799789998