HHsearch alignment for GI: 254781049 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.54 E-value=0.86 Score=24.91 Aligned_cols=103 Identities=21% Similarity=0.303 Sum_probs=68.9
Q ss_pred HHHHHCCCCC-----------CEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999658996-----------24884278889899999999986199865899963586132899999999999972999
Q gi|254781049|r 284 DIIKLYGGAP-----------ANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKIN 352 (398)
Q Consensus 284 D~i~~~Gg~p-----------ANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~ 352 (398)
T Consensus 299 ~aL~~F~Gl~hR~E~v~~~~GV~~iNDSKaTn~~at~~Al~~~-~--~-~i~l--I~GG~~Kg~d~~~-l~~~~~~~--- 368 (445)
T PRK04308 299 EHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGL-Q--N-PLFV--ILGGMGKGQDFTP-LRDALAGK--- 368 (445)
T ss_pred HHHHHCCCCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHHC-C--C-CEEE--EECCCCCCCCHHH-HHHHHHHH---
T ss_conf 9987579999862899864898898079888889999999827-7--9-7799--9767667778699-99998752---
Q ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC
Q ss_conf 879997489858999999997699589949989999999998506
Q gi|254781049|r 353 IPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 (398)
Q Consensus 353 ~pivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~k~ 397 (398)
T Consensus 369 ~~-~v~~~G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~~a~~ 412 (445)
T PRK04308 369 AK-GVFLIGVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYAQAEA 412 (445)
T ss_pred CE-EEEEECCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCC
T ss_conf 56-999989799999998863798558768799999999974889