HHsearch alignment for GI: 254781049 and conserved domain: PRK12833

Probab=98.55  E-value=5.2e-06  Score=59.27  Aligned_cols=107  Identities=24%  Similarity=0.358  Sum_probs=77.6

Q ss_pred             HHHHHHHHHCCCCCCCCE--EECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf             999999998689888815--747999999999872998699971213687656565567777777079958999999999
Q gi|254781049|r    6 YQAKALLRKYNVPVAKGV--VISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI   83 (398)
Q Consensus         6 yqaK~lL~~~GIpvp~g~--~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a   83 (398)
T Consensus       120 ~~ar~~a~~~gvPvvpgs~~~v~~~~ea~~~a~~iGyPv-~iKAs--~GGGGr------------Gmriv~~~~el~~~~  184 (458)
T PRK12833        120 ARARETARRAGVPTVPGSDGVVASLDAALEVAARIGYPV-MIKAA--AGGGGR------------GIRVAHDAAQLAAEL  184 (458)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH-HHHHC--CCCCCC------------CEEEECCCCCHHHHH
T ss_conf             999999998499966896676677999999998659754-21332--589987------------107952641148999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEE
Q ss_conf             98618765442122222443301103455565058999998347780489984
Q gi|254781049|r   84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAS  136 (398)
Q Consensus        84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S  136 (398)
T Consensus       185 ~~a~~ea----~---~~Fg~~~v~iEk~i~~~RHIEVQvl~D~~-~-~vhl~e  228 (458)
T PRK12833        185 PLAQREA----Q---AAFGDGGVYLERFIARARHIEVQILGDGE-N-VVHLFE  228 (458)
T ss_pred             HHHHHHH----H---HHCCCCCEEEEEECCCCEEEEEEEEECCC-C-EEEEEE
T ss_conf             9999999----9---72699764787613675079999985478-7-699850