HHsearch alignment for GI: 254781049 and conserved domain: TIGR02712
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=98.64 E-value=9.7e-07 Score=64.08 Aligned_cols=255 Identities=20% Similarity=0.222 Sum_probs=142.2
Q ss_pred HHHHHHHHHCCCCCCCC-EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 99999999868988881-57479999999998729986999712136876565655677777770799589999999999
Q gi|254781049|r 6 YQAKALLRKYNVPVAKG-VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398)
Q Consensus 6 yqaK~lL~~~GIpvp~g-~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398)
T Consensus 116 HtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPV-MlKST--AGGGGI------------Gl~~c~~~~eL~~aFe 180 (1226)
T TIGR02712 116 HTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPV-MLKST--AGGGGI------------GLQKCDNAAELAEAFE 180 (1226)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCE-EEEEC--CCCCCC------------CCCCCCCHHHHHHHHH
T ss_conf 56899999668898885155877999999986469954-79870--787652------------4511189899999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCC
Q ss_conf 86187654421222224433011034555650589999983477804899844788402455574831220332144457
Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIG 164 (398)
Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~g 164 (398)
T Consensus 181 ~V--krlg-----~~~F~daGVFlErfv~~ARHvEVQifGDG~-G~v~aLGeR----DC-SLQRRNQKVvEETPAP---- 243 (1226)
T TIGR02712 181 TV--KRLG-----ESFFGDAGVFLERFVENARHVEVQIFGDGK-GKVVALGER----DC-SLQRRNQKVVEETPAP---- 243 (1226)
T ss_pred HH--HHHH-----HHCCCCCCEEHHHHHCCCCEEEEEEEECCC-CCEEEEECC----CC-CCCCCCCCEEEECCCC----
T ss_conf 98--9988-----632363514340320378428998752697-336997116----75-4444566558727746----
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH------------H--HCCCCCCCCCEEEECCCC---CEEEEE----
Q ss_conf 8957888788751988899885999999998999------------9--559751023267990599---679940----
Q gi|254781049|r 165 VTSEDVASLCDMLELQGQARIDGGDLFPNLYKAF------------C--DKDMSLLEINPLIIMKNG---RLRVLD---- 223 (398)
Q Consensus 165 l~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f------------~--e~Da~liEINPLvvt~dg---~vvAlD---- 223 (398)
T Consensus 244 -------------~LP~~~R~~L~~AA~~Lg~~V~YrSAGTVEFiYD~~~d~FYFLEVNTRLQVEHPvTE~VtGlDLVEW 310 (1226)
T TIGR02712 244 -------------NLPEETRAALLAAAEKLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEW 310 (1226)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHH
T ss_conf -------------8648999999999999999718763760477402210871211323411133573017846408989
Q ss_pred -EEEEECCCHHHHHHHHHHHHCC-----CC-------CCHHHHHHHH----CC-C----------CEEECCCCEEEEECC
Q ss_conf -0132157355641027863100-----01-------5622245775----39-8----------644228817999555
Q gi|254781049|r 224 -SKISFDDNALYRHLDIQELRDV-----SE-------EDSREIEAKQ----HN-L----------SYIALDGNIGCMVNG 275 (398)
Q Consensus 224 -AKi~iDDnA~fR~~~~~~~~d~-----~~-------~~~~E~~A~~----~~-l----------~yv~LdG~Ig~~vnG 275 (398)
T Consensus 311 M~r~AAg-----~~p~~~~~~~~~~~~l~p~G~aiEaRvYAEnP~k~F~PSpG~Lt~V~FP~~~G~~~RvDTWV~----- 380 (1226)
T TIGR02712 311 MVRIAAG-----ELPDFDSLNIEIFDNLTPRGAAIEARVYAENPAKNFQPSPGLLTEVQFPDDGGKAVRVDTWVE----- 380 (1226)
T ss_pred HHHHHCC-----CCCCHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEECEEC-----
T ss_conf 9997168-----888852443000357887503899998440776777269860688772788895378702112-----
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEE------CCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 03689999999965899624884------278889899999999986199865899963
Q gi|254781049|r 276 AGLAMATMDIIKLYGGAPANFLD------VGGGADQDKVAAAFKIITSDSSVKGILINI 328 (398)
Q Consensus 276 aGlamatmD~i~~~Gg~pANFlD------~gG~a~~e~~~~a~~~il~~~~vk~iliNi 328 (398)
T Consensus 381 -------------~Gtevsp~YDPmlAKiIv~g~~R~~A~~kL~~AL~~T~v~Gi~TNL 426 (1226)
T TIGR02712 381 -------------TGTEVSPEYDPMLAKIIVHGKDREDAIAKLSQALDETRVYGIETNL 426 (1226)
T ss_pred -------------CCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf -------------7835677658742446643679789999999887301012354247