HHsearch alignment for GI: 254781049 and conserved domain: TIGR02717
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=99.41 E-value=4.5e-12 Score=99.21 Aligned_cols=187 Identities=24% Similarity=0.396 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEE----EEE--------EEEEECCCHHHHHH------HHHHHHCCC
Q ss_conf 859999999989999559751023267990599679----940--------01321573556410------278631000
Q gi|254781049|r 185 IDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLR----VLD--------SKISFDDNALYRHL------DIQELRDVS 246 (398)
Q Consensus 185 ~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vv----AlD--------AKi~iDDnA~fR~~------~~~~~~d~~ 246 (398)
T Consensus 218 ~DG~~Fl~~A~~~s~~--------KPiv~lKsG~s~~GakAA~SHTGaLAGs~~~y~--aaf~q~G~iRa~~~~ELfd~A 287 (457)
T TIGR02717 218 KDGRKFLKTAKEISKK--------KPIVVLKSGTSEAGAKAASSHTGALAGSDEAYD--AAFKQAGVIRADSIEELFDLA 287 (457)
T ss_pred CCHHHHHHHHHHHHHC--------CCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHH--HHHCCCCEEEEECHHHHHHHH
T ss_conf 0416899998886305--------988999368883456765210231336689999--874301438870177889999
Q ss_pred CCCHHHHHHHHCCCCEEEC--CC-CEEEEECCCHHHHHHHHHHHHCCCCCCEEE---------------------ECCC-
Q ss_conf 1562224577539864422--88-179995550368999999996589962488---------------------4278-
Q gi|254781049|r 247 EEDSREIEAKQHNLSYIAL--DG-NIGCMVNGAGLAMATMDIIKLYGGAPANFL---------------------DVGG- 301 (398)
Q Consensus 247 ~~~~~E~~A~~~~l~yv~L--dG-~Ig~~vnGaGlamatmD~i~~~Gg~pANFl---------------------D~gG- 301 (398)
T Consensus 288 ~-----------~L~~~~~~~~g~~~~IiTN~GG~Gvia~D~~~~~Gl~L~~~~~~t~~~L~~~LP~~as~~NPVD~~Gs 356 (457)
T TIGR02717 288 R-----------LLSNQPLPPKGNRVAIITNAGGPGVIATDACEEVGLELAELSEKTKEKLRNILPPEASIKNPVDVLGS 356 (457)
T ss_pred H-----------HHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf 9-----------98358989988769999789616778765677749745558589999999747611477875125522
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCC--HHH-HHHHHHHHHHHHHHCCCC---CCEEE-ECCCCCHHHHHHHHHHC
Q ss_conf 889899999999986199865899963586--132-899999999999972999---87999-74898589999999976
Q gi|254781049|r 302 GADQDKVAAAFKIITSDSSVKGILINIFGG--IMR-CDVLVKGILSAVKEVKIN---IPLVM-RLEGANVDIGNRLIAES 374 (398)
Q Consensus 302 ~a~~e~~~~a~~~il~~~~vk~iliNifGG--I~~-cd~vA~gii~a~~~~~~~---~pivv-Rl~Gtn~~~g~~il~~~ 374 (398)
T Consensus 357 DA~~~~Y~~~l~~v~eD~nVd~~~v-v~~~~a~~~~~~~va~~~~~~~~~~~~k~~~Kpvv~~~~gG~~~~~a~~~L~~~ 435 (457)
T TIGR02717 357 DATAERYAKALKIVAEDENVDGVVV-VLTPTAMTDKPEEVAKGIIEVAKKSNEKKRDKPVVAGFVGGKSVKEAKRILEEN 435 (457)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEE-EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHC
T ss_conf 7898999999999834888888999-642530246799999988754303674212474489984673220156622315
Q ss_pred CCCEEEECCHHHHHHHHHHHH
Q ss_conf 995899499899999999985
Q gi|254781049|r 375 GLNVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 375 g~~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 436 giP~Y~--~Pe~AV~Al~~l~ 454 (457)
T TIGR02717 436 GIPNYT--FPERAVKALSALY 454 (457)
T ss_pred CCCCCC--CHHHHHHHHHHHH
T ss_conf 887647--9688999999861