HHsearch alignment for GI: 254781049 and conserved domain: cd01575
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=91.85 E-value=1 Score=24.38 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=65.5
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999965899624884278889899999999986-19986589996358613289999999999997299987999748
Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 (398)
Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~ 360 (398)
T Consensus 138 ~~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dai~~-------~nD~~A~g~~~~l~~~g~~iP~disvi 210 (268)
T cd01575 138 FRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFC-------SNDDLALGALFECQRRGISVPEDIAIA 210 (268)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEE-------CCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9999997698988089954899889999999999956999837998-------788999999999998389999977999
Q ss_pred CCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHH
Q ss_conf 9858999999997699589-949989999999998
Q gi|254781049|r 361 GANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHA 394 (398)
Q Consensus 361 Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~ 394 (398)
T Consensus 211 gfdd~---~~~~~~~p~ltti~~~~~~~g~~a~~~ 242 (268)
T cd01575 211 GFGDL---EIAAALPPALTTVRTPRREIGRRAAEL 242 (268)
T ss_pred EECCH---HHHHCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 98973---899616899679996999999999999