HHsearch alignment for GI: 254781049 and conserved domain: cd06267
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=91.68 E-value=1.1 Score=24.26 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=60.4
Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCE---EEE
Q ss_conf 9999965899624884278889899999999986-199865899963586132899999999999972999879---997
Q gi|254781049|r 283 MDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPL---VMR 358 (398)
Q Consensus 283 mD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pi---vvR 358 (398)
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~D~~A~g~~~~l~~~g~~iP~di~Iig 211 (264)
T cd06267 139 REALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIF-------AANDLMAIGALRALRELGLRVPEDVSVVG 211 (264)
T ss_pred HHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 99999869998853075278977999999999996599998998-------78879999999999982999999779999
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 4898589999999976995899499899999999985
Q gi|254781049|r 359 LEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 359 l~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 212 ~d~~--~~-~~~-~~p~ltt-v~~~~~~ig~~a~~~l 243 (264)
T cd06267 212 FDDI--PL-AEL-LTPPLTT-VRQPIEEMGRAAAELL 243 (264)
T ss_pred ECCH--HH-HHC-CCCCCEE-EEECHHHHHHHHHHHH
T ss_conf 9984--89-853-4899479-9909999999999999