HHsearch alignment for GI: 254781049 and conserved domain: cd06267

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=91.68  E-value=1.1  Score=24.26  Aligned_cols=101  Identities=16%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCE---EEE
Q ss_conf             9999965899624884278889899999999986-199865899963586132899999999999972999879---997
Q gi|254781049|r  283 MDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPL---VMR  358 (398)
Q Consensus       283 mD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pi---vvR  358 (398)
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~D~~A~g~~~~l~~~g~~iP~di~Iig  211 (264)
T cd06267         139 REALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIF-------AANDLMAIGALRALRELGLRVPEDVSVVG  211 (264)
T ss_pred             HHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             99999869998853075278977999999999996599998998-------78879999999999982999999779999


Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             4898589999999976995899499899999999985
Q gi|254781049|r  359 LEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV  395 (398)
Q Consensus       359 l~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~  395 (398)
T Consensus       212 ~d~~--~~-~~~-~~p~ltt-v~~~~~~ig~~a~~~l  243 (264)
T cd06267         212 FDDI--PL-AEL-LTPPLTT-VRQPIEEMGRAAAELL  243 (264)
T ss_pred             ECCH--HH-HHC-CCCCCEE-EEECHHHHHHHHHHHH
T ss_conf             9984--89-853-4899479-9909999999999999